PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna28834.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 319aa    MW: 35355.8 Da    PI: 8.7901
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna28834.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.3e-091261582254
                              SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              ++yp+ +++  LA+++gL+ +qV++WF N R +
  mrna28834.1-v1.0-hybrid 126 HPYPTDTDKHMLASQTGLSRNQVSNWFINARVR 158
                              89*****************************87 PP
2BELL476.4e-161413272
                     BELL 32 tvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                             +v++sFe v gl sa+pY+slAl+++Sr+F+cL   i++q+
  mrna28834.1-v1.0-hybrid  1 MVVASFESVSGLSSATPYISLALNTVSRQFKCLTGSIKDQL 41
                             79***********************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075265.3E-10137IPR006563POX domain
PROSITE profilePS5007111.82399162IPR001356Homeobox domain
CDDcd000866.71E-12102163No hitNo description
SMARTSM003892.1E-8102166IPR001356Homeobox domain
SuperFamilySSF466891.75E-17104170IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-27105166IPR009057Homeodomain-like
PfamPF059201.4E-18119158IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MVVASFESVS GLSSATPYIS LALNTVSRQF KCLTGSIKDQ LKHIRKALGE DFSSAKVAST  60
TGYNSKSDKT VGKQKYMGLG LQKHKAAGGL DAGFSEHQQH VWRPQRGLPD RSVAILRAWL  120
FDHFLHPYPT DTDKHMLASQ TGLSRNQVSN WFINARVRVW KPMVEEIHML ETRGSMEACQ  180
DPGKDGNSPT EGTSRPINEQ LGMHRALSDR QLESSGIGSL RDAPNVEVQQ SQEIKRSRIE  240
CQVPSSMDSA LMGFVPYNRS GLEVGGLAAV SLTLGLRHGV ESVHQQQQQQ QQQQQLHEQD  300
EYQLRRQSGG YMIHDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15108166563Homeobox protein Meis2
3k2a_B2e-15108166563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna28834.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459366.10.0PREDICTED: BEL1-like homeodomain protein 8 isoform X1
RefseqXP_011459367.10.0PREDICTED: BEL1-like homeodomain protein 8 isoform X1
RefseqXP_011459368.10.0PREDICTED: BEL1-like homeodomain protein 8 isoform X1
TrEMBLA0A2P6QH470.0A0A2P6QH47_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004291636.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34813257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.13e-62BEL1-like homeodomain 8