PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna20598.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 344aa MW: 38638.8 Da PI: 6.6656

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna20598.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	8e-05	181	200	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ mrna20598.1-v1.0-hybrid 181 FSCPLCFKTFNRYNNMQMHM 200 89*****************9 PP
2	zf-C2H2	14.6	9.7e-05	265	287	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ mrna20598.1-v1.0-hybrid 265 FMCRKCGKAFAVRGDWRTHEKNC 287 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.8E-5	181	200	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.61	181	203	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.66	181	208	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	183	203	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.37E-6	246	285	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.2E-6	261	285	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	49	265	285	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.808	265	285	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MTDPYYPSNY FNGWFNLNFS PPAPSLAYTL HHHQAPFSNY NMINNNSHSF FSTHPQSSSS 60 VSSSPPSPPL KEALPLLSQS PTRDHPDEIL AEDHDHHADD NDEDEDNEET VTVALHLGLP 120 NPSSAADLIS RLSSSEISSA DREDAAATPN ASSLGYVSNR LNKGQYWIPT PSQILIGPTQ 180 FSCPLCFKTF NRYNNMQMHM WGHGSQYRKG PESLRGTQPT AMLRLPCYCC APGCRNNIDH 240 PRSKPLKDFR TLQTHYKRKH GIKPFMCRKC GKAFAVRGDW RTHEKNCGKL WYCTCGSDFK 300 HKRSLKDHIK AFGQGHAAYG IDCFEEEEDD DAASEIEEND SCH*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MTDPYYPSNY FNGWFNLNFS PPAPSLAYTL HHHQAPFSNY NMINNNSHSF FSTHPQSSSS  60
VSSSPPSPPL KEALPLLSQS PTRDHPDEIL AEDHDHHADD NDEDEDNEET VTVALHLGLP  120
NPSSAADLIS RLSSSEISSA DREDAAATPN ASSLGYVSNR LNKGQYWIPT PSQILIGPTQ  180
FSCPLCFKTF NRYNNMQMHM WGHGSQYRKG PESLRGTQPT AMLRLPCYCC APGCRNNIDH  240
PRSKPLKDFR TLQTHYKRKH GIKPFMCRKC GKAFAVRGDW RTHEKNCGKL WYCTCGSDFK  300
HKRSLKDHIK AFGQGHAAYG IDCFEEEEDD DAASEIEEND SCH*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna20598.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004295197.1	0.0	PREDICTED: zinc finger protein WIP2
Swissprot	Q9SVY1	1e-131	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A498IPH8	1e-168	A0A498IPH8_MALDO; Uncharacterized protein
STRING	XP_004295197.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-121	C2H2 family protein

Link Out ? help Back to Top
Phytozome	mrna20598.1-v1.0-hybrid

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]