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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna17698.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 453aa MW: 51223.9 Da PI: 6.1147 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.6e-19 | 220 | 270 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge mrna17698.1-v1.0-hybrid 220 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 270 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.65E-34 | 219 | 279 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-23 | 220 | 278 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.5E-40 | 220 | 283 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.998 | 220 | 277 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-32 | 220 | 278 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-11 | 221 | 232 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-12 | 221 | 270 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-11 | 243 | 259 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MAAAKRSGES NFETQMETSK DCDLDKGKEH DFLLEGHQWK PVFDEAPVSN RPLKKIKSPE 60 RSHQHRSSAF SPEFQIPSPP PPPRSSSDTS TITSCCPLSS RIVFPFAFDG SLPQQQQQQP 120 IQFPRQFHST GLQPNQFPPN THVVEQQQQQ NQQQMISFAS QQQHMISWQQ HQQQQMLQYW 180 SDALNLSPRG RMMMMMNRFG GANSSGGIRP PAMPISTSKL YRGVRQRHWG KWVAEIRLPR 240 NRTRLWLGTF DTAEDAAMAY DREAFKLRGE NARLNFPELF LNKEKHNDNA AAVSAAAPIQ 300 QVSKPLRSQG MQQLKNLDLQ LQVPISDNET VAPPPAPYAQ PQEDDDTSHQ LEVENHGERG 360 GIMSDAPTQE MVWGEMAEAW LNAIPQGWGP GSPVWDDLEL DMTSNNLVLP SHDHNGFTAN 420 NSNRHDFPQQ DDNSCSASSS YPMQPFFWKD QD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-21 | 219 | 277 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-20 | 216 | 277 | 1 | 63 | ATERF1 |
3gcc_A | 1e-20 | 216 | 277 | 1 | 63 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00458 | DAP | Transfer from AT4G28140 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna17698.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ669822 | 2e-72 | JQ669822.1 Malus x domestica dehydration-responsive element-binding protein (DREB6) (DREB6-1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011466891.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF054-like | ||||
TrEMBL | A0A3S8T8Z7 | 0.0 | A0A3S8T8Z7_FRAAN; Transcription factor ERF1 | ||||
STRING | XP_004305415.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4268 | 32 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 2e-53 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna17698.1-v1.0-hybrid |