PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G28140.1
Common NameERF054, F26K10.20, QRAP2
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 292aa    MW: 33403.2 Da    PI: 5.431
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G28140.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18142192256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr++  +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ + kl+g+
  AT4G28140.1 142 LYRGVRQRQ-WGKWVAEIRKPRS---RARLWLGTFDTAEEAAMAYDRQAFKLRGH 192
                  59****999.**********954...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.26E-34141201No hitNo description
SuperFamilySSF541716.21E-23142200IPR016177DNA-binding domain
SMARTSM003809.4E-39142205IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-32142200IPR001471AP2/ERF domain
PROSITE profilePS5103223.578142199IPR001471AP2/ERF domain
PfamPF008471.6E-13143192IPR001471AP2/ERF domain
PRINTSPR003672.7E-11143154IPR001471AP2/ERF domain
PRINTSPR003672.7E-11165181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000026anatomyprimary root tip
PO:0000230anatomyinflorescence meristem
PO:0000272anatomyprotoxylem
PO:0000293anatomyguard cell
PO:0000372anatomymetaxylem
PO:0003015anatomyprimary root differentiation zone
PO:0009005anatomyroot
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020124anatomyroot stele
PO:0025022anatomycollective leaf structure
PO:0025257anatomyprimary root elongation zone
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDFDEELNLC ITKGKNVDHS FGGEASSTSP RSMKKMKSPS RPKPYFQSSS SPYSLEAFPF  60
SLDPTLQNQQ QQLGSYVPVL EQRQDPTMQG QKQMISFSPQ QQQQQQQYMA QYWSDTLNLS  120
PRGRMMMMMS QEAVQPYIAT KLYRGVRQRQ WGKWVAEIRK PRSRARLWLG TFDTAEEAAM  180
AYDRQAFKLR GHSATLNFPE HFVNKESELH DSNSSDQKEP ETPQPSEVNL ESKELPVIDV  240
GREEGMAEAW YNAITSGWGP ESPLWDDLDS SHQFSSESSS SSPLSCPMRP FF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21141199160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-21141199463ATERF1
3gcc_A4e-21141199463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.320430.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible253799_at0.0
Expression AtlasAT4G28140-
AtGenExpressAT4G28140-
ATTED-IIAT4G28140-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G28140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G28140
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615720.0AL161572.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68.
GenBankAY0745740.0AY074574.1 Arabidopsis thaliana AT4g28140/F26K10_20 mRNA, complete cds.
GenBankAY0973940.0AY097394.1 Arabidopsis thaliana AT4g28140/F26K10_20 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankDQ0115790.0DQ011579.1 Arabidopsis thaliana transcription factor QRAP2 (QRAP2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_194543.10.0Integrase-type DNA-binding superfamily protein
SwissprotQ9M0J30.0ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBLA0A178UZS20.0A0A178UZS2_ARATH; Uncharacterized protein
STRINGAT4G28140.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  3. Taji T, et al.
    Comparative genomics in salt tolerance between Arabidopsis and aRabidopsis-related halophyte salt cress using Arabidopsis microarray.
    Plant Physiol., 2004. 135(3): p. 1697-709
    [PMID:15247402]
  4. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  5. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  6. Truman W,de Zabala MT,Grant M
    Type III effectors orchestrate a complex interplay between transcriptional networks to modify basal defence responses during pathogenesis and resistance.
    Plant J., 2006. 46(1): p. 14-33
    [PMID:16553893]
  7. Lee JY, et al.
    Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(15): p. 6055-60
    [PMID:16581911]
  8. Mace DL, et al.
    Quantification of transcription factor expression from Arabidopsis images.
    Bioinformatics, 2006. 22(14): p. e323-31
    [PMID:16873489]
  9. Libault M,Wan J,Czechowski T,Udvardi M,Stacey G
    Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor.
    Mol. Plant Microbe Interact., 2007. 20(8): p. 900-11
    [PMID:17722694]
  10. Bechtold U, et al.
    Impact of chloroplastic- and extracellular-sourced ROS on high light-responsive gene expression in Arabidopsis.
    J. Exp. Bot., 2008. 59(2): p. 121-33
    [PMID:18212028]
  11. Soitamo AJ,Piippo M,Allahverdiyeva Y,Battchikova N,Aro EM
    Light has a specific role in modulating Arabidopsis gene expression at low temperature.
    BMC Plant Biol., 2008. 8: p. 13
    [PMID:18230142]
  12. Xu H,Wang X,Chen J
    Overexpression of the Rap2.4f transcriptional factor in Arabidopsis promotes leaf senescence.
    Sci China Life Sci, 2010. 53(10): p. 1221-6
    [PMID:20953945]
  13. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  14. Lumba S, et al.
    A mesoscale abscisic acid hormone interactome reveals a dynamic signaling landscape in Arabidopsis.
    Dev. Cell, 2014. 29(3): p. 360-72
    [PMID:24823379]