PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15563.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 199aa    MW: 23016.2 Da    PI: 8.0954
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15563.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.62.5e-1610461551
                             HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             +R+++++ KA  LSvLCdaevavi f ++gkl+e+ss
  mrna15563.1-v1.0-hybrid 10 RRQATLFRKARHLSVLCDAEVAVIAFTKDGKLHEFSS 46
                             79*********************************96 PP
2K-box23.81.9e-09941682598
                    K-box  25 kkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk.ekelqeenkaLrkkl 98 
                              k++   L  e+ + +G++L+ Ls +eL  Le+q   +l  + +kK+el++e+++++  + e++ + ++k+L + +
  mrna15563.1-v1.0-hybrid  94 KRQHAALSLEKSRKMGKELDGLSREELCALEEQQLWALLAVNNKKKELIMEMLQRSMSRdEQRGDLQEKNLMRGF 168
                              66777888888999**************************************98765551566666666776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-4147IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-151062IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.2361048IPR002100Transcription factor, MADS-box
PfamPF003192.9E-121044IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-101025IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-102546IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.18383174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MSSTENQGIR RQATLFRKAR HLSVLCDAEV AVIAFTKDGK LHEFSSTTME HTLSRYKGKV  60
EQSKPGERRR REPAAKLKEE PKPCDEKYIL DEPKRQHAAL SLEKSRKMGK ELDGLSREEL  120
CALEEQQLWA LLAVNNKKKE LIMEMLQRSM SRDEQRGDLQ EKNLMRGFEE RPYVLQDHNR  180
PSEDSDDVHS ELLQLRLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16671ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15563.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305660.11e-144PREDICTED: agamous-like MADS-box protein AGL15
TrEMBLA0A2P6RC177e-88A0A2P6RC17_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004305660.11e-143(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2563223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.19e-17AGAMOUS-like 15