PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14896.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 26505.6 Da    PI: 7.0071
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14896.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.62.8e-27959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k ien++nrqvt+skRrngi+KKA+EL vLCda v++i+ sst+k++ey+s
  mrna14896.1-v1.0-hybrid  9 KLIENQTNRQVTYSKRRNGIFKKAQELTVLCDAHVSLIMQSSTDKIHEYIS 59
                             569**********************************************86 PP
2K-box57.46.5e-2071140170
                    K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                              yqk+ + +l+++++e ++++l kLk+ +++L+r +R++lG dL+ L+l eLq Le+++ +s++ iR++K 
  mrna14896.1-v1.0-hybrid  71 YQKNLQIDLWSSHYEAMKENLWKLKEVNNKLRRDIRQRLGHDLDGLNLAELQDLEDKIAQSVQIIRERKA 140
                              78888899************************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.137161IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-38160IPR002100Transcription factor, MADS-box
CDDcd002655.46E-36280No hitNo description
SuperFamilySSF554559.16E-35296IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.3E-221157IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-253859IPR002100Transcription factor, MADS-box
PfamPF014862.8E-1382140IPR002487Transcription factor, K-box
PROSITE profilePS512979.72484181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGRGKIEIKL IENQTNRQVT YSKRRNGIFK KAQELTVLCD AHVSLIMQSS TDKIHEYISP  60
TTTHKKMFDL YQKNLQIDLW SSHYEAMKEN LWKLKEVNNK LRRDIRQRLG HDLDGLNLAE  120
LQDLEDKIAQ SVQIIRERKA GNEDPQYGYV DDEGDYESAV ALANGASNLY LFNRVHNNHN  180
LDHGHDGGSL VSGITHLHNP INNHHSNHNL EDGHGGGSFM SSITHLHDLR LA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-14159159MEF2C
5f28_B1e-14159159MEF2C
5f28_C1e-14159159MEF2C
5f28_D1e-14159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14896.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0559661e-180AB055966.1 Rosa rugosa MASAKO B3 mRNA for MADS-box protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287844.11e-166PREDICTED: floral homeotic protein DEFICIENS-like
SwissprotQ003J21e-80TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLQ93X101e-145Q93X10_ROSRU; MADS-box protein
STRINGXP_004287844.11e-165(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.17e-60MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]