PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14361.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 380aa    MW: 43232.2 Da    PI: 7.1609
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14361.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05221240120
                              EEETTTTEEESSHHHHHHHH CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                              ++Cp C k+F+r  n++ H+
  mrna14361.1-v1.0-hybrid 221 FSCPVCYKTFNRYNNMQMHM 240
                              89*****************9 PP
2zf-C2H214.40.00011305327123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              + C +Cgk F  + + ++H +++
  mrna14361.1-v1.0-hybrid 305 FMCRKCGKAFAVRGDWRTHEKNC 327
                              89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.42E-5217243No hitNo description
PROSITE profilePS501579.743221248IPR007087Zinc finger, C2H2
SMARTSM003550.45221243IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-6221240IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280223243IPR007087Zinc finger, C2H2
SuperFamilySSF576671.73E-6287325No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5301325IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549305325IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808305325IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MAEYPYSSNF FTGLFKFNPL LHPHHREHPL ISNPHPPPPP PPQPLPLPQP PYAHNFFNIS  60
YNQNHNLYSS SYSTQTTHHQ PPSPPLREAL PLLNRLSPTK HHQDQEHEHH HHHEYYSCST  120
DQMDVDDKIS KLHDKEDHEE EDETSVTVAL HIGLPSPSAA EMASVLSAAS SSSEISTTHD  180
KDLIGDHGDD STGYPMNRSS LNKGQYWIPT PSQILIGPTQ FSCPVCYKTF NRYNNMQMHM  240
WGHGSQYRKG PESLRGTQPT GMLRLPCYCC TPGCRNNIDH PRAKPLKDFR TLQTHYKRKH  300
GIKPFMCRKC GKAFAVRGDW RTHEKNCGKL WYCICGSDFK HKRSLKDHIK AFGNGHAAYG  360
IDGFEEDDEP ASEVEQDND*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14361.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305379.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-140ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2P6RDS90.0A0A2P6RDS9_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004305379.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-136C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]