PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11267.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 202aa    MW: 23437.4 Da    PI: 7.7398
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11267.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF801.6e-25960151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeyss 51
                             krien+snrqvt+skRrngi+KKA+E+ vLCda+v++ii+  s+gk+ ey+s
  mrna11267.1-v1.0-hybrid  9 KRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIINpSSGKMSEYCS 60
                             79**********************************99987257******96 PP
2K-box56.41.3e-1973164197
                    K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                              y++++g +l+++k+e+ ++el+++kke++n+q  +Rhl Ged++s+++ eL  Le+ Le++l+      +e+  ++ +  +  e e
  mrna11267.1-v1.0-hybrid  73 YHSQTGLRLWDTKHENVSNELDRIKKENDNMQVHLRHLNGEDITSMNHIELGDLEKSLENGLTA-----TEVAQRHRDSYKAVEAE 153
                              67888899******************************************************86.....67777777888888888 PP

                    K-box  87 lqeenkaLrkk 97 
                              +++ n +L+k+
  mrna11267.1-v1.0-hybrid 154 HDRLNYELHKQ 164
                              88888777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.263162IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-33161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-33298IPR002100Transcription factor, MADS-box
CDDcd002651.77E-35282No hitNo description
PRINTSPR004046.1E-21323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-201058IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-213859IPR002100Transcription factor, MADS-box
PfamPF014863.2E-1184137IPR002487Transcription factor, K-box
PROSITE profilePS512979.886184IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGIIK KAKEITVLCD AKVSLIIINP SSGKMSEYCS  60
GSQETLLEIL SRYHSQTGLR LWDTKHENVS NELDRIKKEN DNMQVHLRHL NGEDITSMNH  120
IELGDLEKSL ENGLTATEVA QRHRDSYKAV EAEHDRLNYE LHKQTIKTED NNLRDIEYQQ  180
RMSHMSFFRL QPIQPNLHHD C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-15167166MEF2 CHIMERA
6byy_B2e-15167166MEF2 CHIMERA
6byy_C2e-15167166MEF2 CHIMERA
6byy_D2e-15167166MEF2 CHIMERA
6bz1_A2e-15167166MEF2 CHIMERA
6bz1_B2e-15167166MEF2 CHIMERA
6bz1_C2e-15167166MEF2 CHIMERA
6bz1_D2e-15167166MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna11267.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0248711e-105EU024871.1 Fragaria vesca subsp. americana clone fosmid 76K13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290915.11e-146PREDICTED: floral homeotic protein PMADS 2-like
SwissprotQ0HA254e-77MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A2P6PXI51e-109A0A2P6PXI5_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004290915.11e-145(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.15e-61MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]