PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10722.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 370aa    MW: 41578.2 Da    PI: 4.8538
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10722.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1713.6e-5361331128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                              lppGfrFhPtdeelv +yL +kveg ++el evi+ +d+yk++Pw+Lp k  +  ++ ew+fF++rd+ky++g+r+nratk+gyWk
  mrna10722.1-v1.0-hybrid   6 LPPGFRFHPTDEELVGYYLSRKVEGLEFEL-EVIPVIDLYKFDPWELPeKsFLPRRDMEWFFFCPRDRKYPNGSRTNRATKAGYWK 90 
                              79****************************.99**************95334455788**************************** PP

                      NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              atgkd++v++ +++++g +ktLvfy+grap g +tdW+mheyrl
  mrna10722.1-v1.0-hybrid  91 ATGKDRKVVC-QSSVTGYRKTLVFYRGRAPLGDRTDWIMHEYRL 133
                              **********.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-604156IPR003441NAC domain
PROSITE profilePS5100558.0186156IPR003441NAC domain
PfamPF023655.9E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGGASLPPGF RFHPTDEELV GYYLSRKVEG LEFELEVIPV IDLYKFDPWE LPEKSFLPRR  60
DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSSVTGYRKT LVFYRGRAPL  120
GDRTDWIMHE YRLNDDFAQG SPGHKGVFAL CRVVKKNEHT QKANDCSAEP KAKTVGSTSS  180
NGDLTSTINS NETLSISAGM SSQVNYQHDE SRHSSHTTSP YEVTPMAEFE PAPRDTNPTA  240
FWVSPDLILD SSKDYPQLQG AVPNYIPQSE FPSTMSPWQS YEHTEISPSS SYSNFGDFQM  300
ADDLNQMACM SPFSGHTDYM SYCGNEGLQF EVSETWDGQA PICRQVSADG NLGELGGLWL  360
QEDNMIIVM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-54516216171NO APICAL MERISTEM PROTEIN
1ut4_B2e-54516216171NO APICAL MERISTEM PROTEIN
1ut7_A2e-54516216171NO APICAL MERISTEM PROTEIN
1ut7_B2e-54516216171NO APICAL MERISTEM PROTEIN
3swm_A2e-54516219174NAC domain-containing protein 19
3swm_B2e-54516219174NAC domain-containing protein 19
3swm_C2e-54516219174NAC domain-containing protein 19
3swm_D2e-54516219174NAC domain-containing protein 19
3swp_A2e-54516219174NAC domain-containing protein 19
3swp_B2e-54516219174NAC domain-containing protein 19
3swp_C2e-54516219174NAC domain-containing protein 19
3swp_D2e-54516219174NAC domain-containing protein 19
4dul_A2e-54516216171NAC domain-containing protein 19
4dul_B2e-54516216171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10722.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300256.10.0PREDICTED: protein ATAF2-like
RefseqXP_011465166.10.0PREDICTED: protein ATAF2-like
SwissprotO496971e-104NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A2P6P9V90.0A0A2P6P9V9_ROSCH; Putative transcription factor NAM family
STRINGXP_004300256.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67223450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-107NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]