PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna09163.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Nin-like

Protein Properties

Length: 359aa MW: 40331.5 Da PI: 4.869

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna09163.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	69.8	3.7e-22	268	317	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++l+dl++yF l+i++A+ +L c+Tv+KriCR++G++RWP Rkiks+ mrna09163.1-v1.0-hybrid 268 AKMKLDDLRAYFRLTIEEASEQLRFCPTVVKRICRKFGVSRWPARKIKSI 317 7899********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.733	257	337	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-20	270	317	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MEARSMTDSP WAVVAYHDPY DHEVPDVLSF VNDSPDPTLD ALFDGGVVPS SPHEYPIPQF 60 DNGIQDFPMS PMWDLGNNYN GVGNYAIPAD HPSQCFEGGG GGESGVDQNP GLAIENNVMQ 120 PPVGAPPPIN FSCFGCQVLR EIVHFNCDYI MTLEIHGRLG AICHAIQESR ANYLYNSSIS 180 SEPHYQNIDF CNKGIEEVKQ FLTLYCLERK VEGYIMQQDP LQAFYQTLCV GMDGEAEEME 240 QSAEEASPKG NGPRLPRYSL AEQRERAAKM KLDDLRAYFR LTIEEASEQL RFCPTVVKRI 300 CRKFGVSRWP ARKIKSIEKQ ISSLRPLLYS CSESTRVHVA AKIKRFEREV ARFVPYVD*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MEARSMTDSP WAVVAYHDPY DHEVPDVLSF VNDSPDPTLD ALFDGGVVPS SPHEYPIPQF  60
DNGIQDFPMS PMWDLGNNYN GVGNYAIPAD HPSQCFEGGG GGESGVDQNP GLAIENNVMQ  120
PPVGAPPPIN FSCFGCQVLR EIVHFNCDYI MTLEIHGRLG AICHAIQESR ANYLYNSSIS  180
SEPHYQNIDF CNKGIEEVKQ FLTLYCLERK VEGYIMQQDP LQAFYQTLCV GMDGEAEEME  240
QSAEEASPKG NGPRLPRYSL AEQRERAAKM KLDDLRAYFR LTIEEASEQL RFCPTVVKRI  300
CRKFGVSRWP ARKIKSIEKQ ISSLRPLLYS CSESTRVHVA AKIKRFEREV ARFVPYVD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna09163.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004301476.1	0.0	PREDICTED: uncharacterized protein LOC101302563
TrEMBL	A0A2P6PER9	0.0	A0A2P6PER9_ROSCH; Putative transcription factor Nin-like family
STRING	XP_004301476.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	1e-13	NIN like protein 7

Link Out ? help Back to Top
Phytozome	mrna09163.1-v1.0-hybrid