PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna07365.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 475aa    MW: 53193.4 Da    PI: 4.6898
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna07365.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.61.4e-17243289248
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                   SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 
                              +ien++ r vtfskR+  ilKK +EL++L++ae avii s+ +k + 
  mrna07365.1-v1.0-hybrid 243 KIENETYRLVTFSKRKSSILKKSSELCTLTGAEMAVIIRSPGNKTFS 289
                              79**************************************9998665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR004042.7E-9236256IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-16240293IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-19241314IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.17241294IPR002100Transcription factor, MADS-box
PfamPF003193.7E-18243290IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-9256271IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-9271292IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MGMTSPTRPD KMDALIDNNV LELLIQSPIR LNESELDEMA DVYDMLATID NRIEVTSMAK  60
GKRSGHWLSG RREKASSETV LQSFLDMDLE VDSEWREERS GLEGGVGGGG EAGPEGESGL  120
LLLLSWIGGR EDEEDFLGYM YVFGGLILYG TEAQKVLCPA LILGLKSSHF FDDCILIARK  180
LQLSIKSKVW LVDDDGDDTP QEKEVNSCRP SWAWMEEALA PKKKISAMSM NVGEENYVSS  240
IQKIENETYR LVTFSKRKSS ILKKSSELCT LTGAEMAVII RSPGNKTFSF GYPCVQAIVD  300
HYLSMYPEPL ANTYIMQQFL ENFPNIEPGS LNAEYTVVNE GLLFYRQQSE VLTKTERVAE  360
DEQRYKRSLR IMNNEDLNSF ERDLIKLHGI VAQQSQELQQ RQVKFPVPSV MTTVGPSVSD  420
EQIPNLELRS DHKTKLLTVL VSGRKPSAHL FHLHDRIDVD LDKSTCGAGG ELKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna07365.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-13AGAMOUS-like 61