PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna04816.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NF-YC | ||||||||
Protein Properties | Length: 195aa MW: 21735.9 Da PI: 10.7312 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 42.4 | 1.5e-13 | 84 | 176 | 7 | 99 |
NF-YC 7 ekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 e+++++++d+k ++P+ r+k+i++ d+ +is++a l+ ka e f+ +++ + + ++++l ++++v + + ++fl mrna04816.1-v1.0-hybrid 84 EEEVDEKEDVKSYTFPMERVKRIVREDDSDLRISSDAVFLINKATEKFLEKFSEDAHKCCVRDRKKALAYKHLSSVVGKMKRYEFL 169 5678999*********************99******************************************************** PP NF-YC 93 vdivprd 99 d vp++ mrna04816.1-v1.0-hybrid 170 SDFVPEK 176 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.08E-18 | 82 | 175 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.7E-17 | 97 | 160 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.1E-21 | 98 | 175 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MATPKKATPP KKTKETKKPS TKISKPSSTQ KKEDNKTKKK TSNGTAAAAK SPSSKSQKSR 60 AQNGAKTTKP PTPKSKQNGK RVKEEEVDEK EDVKSYTFPM ERVKRIVRED DSDLRISSDA 120 VFLINKATEK FLEKFSEDAH KCCVRDRKKA LAYKHLSSVV GKMKRYEFLS DFVPEKIKAG 180 DALAKRKQVQ DGTS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna04816.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011461702.1 | 1e-136 | PREDICTED: DNA polymerase epsilon subunit C | ||||
TrEMBL | A0A2P6QHI5 | 3e-82 | A0A2P6QHI5_ROSCH; Putative transcription factor Hap3/NF-YB family | ||||
STRING | XP_008358413.1 | 4e-72 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12016 | 30 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 6e-32 | nuclear factor Y, subunit C10 |
Link Out ? help Back to Top | |
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Phytozome | mrna04816.1-v1.0-hybrid |