PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02025.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 278aa    MW: 30975.4 Da    PI: 8.0974
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02025.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.47.2e-1515106199
                              EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                              ffkvl     ++ +rl +p +f+++   +g+   + +  l+ +sg     ++  + + +++++ +GW+ Fvk+++L+ gDf++F++
  mrna02025.1-v1.0-hybrid  15 FFKVL--IGDFS-KRLLIPPEFTKNLvwNGI--FPHKCALRGPSGLLCAAEV--ESTENGMFFHNGWECFVKDHHLELGDFLIFRY 93 
                              56666..44444.57********66699656..56689**************..999999************************** PP

                              -SSSEE..EEEEE-S CS
                       B3  85 dgrsefelvvkvfrk 99 
                              dg+s+f   v+++++
  mrna02025.1-v1.0-hybrid  94 DGESKF--SVTIYDR 106
                              **9999..8888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-1910109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-2112112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.77112107IPR003340B3 DNA binding domain
CDDcd100173.57E-1713105No hitNo description
PfamPF023622.6E-1215106IPR003340B3 DNA binding domain
SMARTSM010193.8E-1015107IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-5189245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-4190244IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MTRKPMMNKC RKPSFFKVLI GDFSKRLLIP PEFTKNLVWN GIFPHKCALR GPSGLLCAAE  60
VESTENGMFF HNGWECFVKD HHLELGDFLI FRYDGESKFS VTIYDRSACE KDVEIAKRRS  120
GSSVSLKNTR NQARVKVEVL DDLVAESFKN INSEDETVVS DEECCNDVKL GKRPANGYLE  180
ETSDGSFLFK SENSCFQRIL TKHSKYHIGF PKELGVAKDL MNKTTMKLED PTGRSWTVGL  240
CVSKNYKQDG KLNLDAAVDG VGGCRGLGGV VGNHLGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02025.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288671.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X1
TrEMBLA0A2P6PDZ21e-109A0A2P6PDZ2_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004288671.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-19B3 family protein