PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

model.Picochlorum_contig_29.g74.t1

Organism

Picochlorum sp. SENEW3

Taxonomic ID

1470871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum

Family

Nin-like

Protein Properties

Length: 366aa MW: 40494.2 Da PI: 6.2435

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
model.Picochlorum_contig_29.g74.t1	genome	Rutgers	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	63.8	2.8e-20	111	154	3	46
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 ++i+le+++ yF+lp +AA+ +g++lT+LKr CR++G++RWP+ model.Picochlorum_contig_29.g74.t1 111 SDITLEEMQGYFHLPAYEAARRMGIGLTILKRLCRKFGVQRWPY 154 78*****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.041	94	181	IPR003035	RWP-RK domain
Pfam	PF02042	7.6E-18	113	156	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MVPATGTEDG VPDKFNSSDT PISSDTSDTE STEDGEHENN QEYNSSPKED HESGAGSSLK 60 FVSGETANNQ SGSRKESVHK SDDGTTGKSD IVKGRSRSAS RKRTKSGRYT SDITLEEMQG 120 YFHLPAYEAA RRMGIGLTIL KRLCRKFGVQ RWPYQRKRFS DMKEEELLEH AQAHLRQQTA 180 VAPTGQQEQQ RPELHALVEQ LLVMLGNQGA TPYQPGYPMP SYQGEGQFPG SLPPHIAGLS 240 GPSIASMAQA YFPPQGSHSD VVFPAAQPVD HAQMHSGSMQ TQQSERTGTG NYLDAVQAYW 300 KRQQDIQQDP GSAFRPFSDT RNTDRPIDTS NAWLLSSSGR FGGTSEEEFR NRNFAAHYRK 360 EDERQ*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MVPATGTEDG VPDKFNSSDT PISSDTSDTE STEDGEHENN QEYNSSPKED HESGAGSSLK  60
FVSGETANNQ SGSRKESVHK SDDGTTGKSD IVKGRSRSAS RKRTKSGRYT SDITLEEMQG  120
YFHLPAYEAA RRMGIGLTIL KRLCRKFGVQ RWPYQRKRFS DMKEEELLEH AQAHLRQQTA  180
VAPTGQQEQQ RPELHALVEQ LLVMLGNQGA TPYQPGYPMP SYQGEGQFPG SLPPHIAGLS  240
GPSIASMAQA YFPPQGSHSD VVFPAAQPVD HAQMHSGSMQ TQQSERTGTG NYLDAVQAYW  300
KRQQDIQQDP GSAFRPFSDT RNTDRPIDTS NAWLLSSSGR FGGTSEEEFR NRNFAAHYRK  360
EDERQ*

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-12	RWP-RK domain-containing protein