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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold23759-augustus-gene-0.2-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | WRKY | ||||||||
Protein Properties | Length: 97aa MW: 10602.3 Da PI: 9.3401 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.1 | 2.4e-30 | 3 | 61 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+ nh+ maker-scaffold23759-augustus-gene-0.2-mRNA-1 3 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNQNHP 61 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 28.415 | 1 | 63 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-26 | 2 | 63 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-33 | 2 | 62 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.5E-30 | 2 | 63 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.0E-26 | 4 | 61 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MITDGCQWRK YGQKMAKGNP CPRAYYRCTM AAGCPVRKQV QRCAEDRTIL ITTYEGNQNH 60 PLPPAAMAMA STTSSAARML ILGSMSSADG LKGTYCF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-24 | 1 | 65 | 13 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012491141.1 | 4e-59 | PREDICTED: probable WRKY transcription factor 31 | ||||
Swissprot | Q9XEC3 | 3e-51 | WRK42_ARATH; WRKY transcription factor 42 | ||||
TrEMBL | A0A2P5S4A4 | 4e-58 | A0A2P5S4A4_GOSBA; Uncharacterized protein | ||||
TrEMBL | A7LHH6 | 3e-58 | A7LHH6_SOYBN; Transcription factor (Fragment) | ||||
STRING | Gorai.007G171900.1 | 1e-58 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9320 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-48 | WRKY family protein |