PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold14565-augustus-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 318aa    MW: 35512.6 Da    PI: 4.9468
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold14565-augustus-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-1977125355
                                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                   y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  maker-scaffold14565-augustus-gene-0.4-mRNA-1  77 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 125
                                                   9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.0E-3976139IPR001471AP2/ERF domain
PROSITE profilePS5103223.77576133IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2276134IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-3276134IPR001471AP2/ERF domain
CDDcd000181.43E-3377134No hitNo description
PRINTSPR003678.4E-127788IPR001471AP2/ERF domain
PfamPF008476.6E-1277125IPR001471AP2/ERF domain
PRINTSPR003678.4E-1299115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MCGGAILANL IPRRQNGGRM SPSELWPNAK RSSFESHMCR LSEADSAPLK RPHSVITPAG  60
GVQETEKPVK RQRKNLYRGI RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDREA  120
RKIRGKKAKV NFPNEEEKQG SYIQNRTNPP SLRNDPSFPL YQTQNPNLNN GFSKSSDLFG  180
FDYDLNEFGG FDCDGFESVG LVNADPIVIE ENSASGSEGA NSSNGLLCVN PIVQEVKVKE  240
EVEKQEIATV GVEEKNEIQK LSDELMAYEN FMKFYQIPYY DGQSVAPPVT IAAQENLVDD  300
LWSFDDDEAV GSSVSPPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2277133360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-21771351574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9804454e-61KM980445.1 Betula platyphylla ethylene response factor protein 1 (ERF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872242.10.0ethylene-responsive transcription factor RAP2-3-like
TrEMBLA0A2N9I9I21e-131A0A2N9I9I2_FAGSY; Uncharacterized protein
STRINGEMJ016171e-101(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-33ethylene-responsive element binding protein