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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
maker-scaffold09786-augustus-gene-0.7-mRNA-1 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family |
NAC |
| Protein Properties |
Length: 345aa MW: 39387.9 Da PI: 5.2793 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold09786-augustus-gene-0.7-mRNA-1 | genome | THGP | View Nucleic Acid |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 171.5 | 2.6e-53 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFsk 63
lppGfrFhPtdeelv +yL++kveg ++el evi+ vd+yk++Pw+Lp k + +++ ew+fF++
maker-scaffold09786-augustus-gene-0.7-mRNA-1 6 LPPGFRFHPTDEELVGYYLRRKVEGLEIEL-EVIPVVDLYKFDPWELPeKsFLPKRDMEWFFFCP 69
79****************************.99**************95344555788******* PP
NAM 64 rdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
rd+ky++g+r+nratk+gyWkatgkd++v++ +++++g +ktLvfy+grap g ++dWvmheyrl
maker-scaffold09786-augustus-gene-0.7-mRNA-1 70 RDRKYPNGSRTNRATKAGYWKATGKDRKVVC-HDAVTGYRKTLVFYRGRAPLGDRSDWVMHEYRL 133
*******************************.999****************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0008283 | Biological Process | cell proliferation |
| GO:0071365 | Biological Process | cellular response to auxin stimulus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 345 aa
Download sequence Send
to blast |
MGGASLPPGF RFHPTDEELV GYYLRRKVEG LEIELEVIPV VDLYKFDPWE LPEKSFLPKR 60
DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC HDAVTGYRKT LVFYRGRAPL 120
GDRSDWVMHE YRLSDDLSLG SSSFQGPFAL CRVVKKNENG QKMNDHGEPK AKRVGSSSSN 180
VDFTSIRASN EPISISNDIS SQASYLQNES QYSSPITPPH EVTPMAEFEP SLVETNPTSF 240
WVSPELILDS SKDYPQVQVA VSEYFPQYQF PGPTTNWPPY EYKEISPSSS YSNFTGEIEV 300
AEDLSRIGCM SPYSGHANYM DLFGNEHMPY EGYDQTNSLR YPHPY
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 5e-53 | 5 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 5e-53 | 5 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 5e-53 | 5 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 5e-53 | 5 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 5e-53 | 5 | 162 | 16 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 5e-53 | 5 | 162 | 16 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}. |
