PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold06585-augustus-gene-0.9-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | WRKY | ||||||||
Protein Properties | Length: 628aa MW: 68238.4 Da PI: 6.9019 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.1 | 1.1e-30 | 353 | 411 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ maker-scaffold06585-augustus-gene-0.9-mRNA-1 353 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRSILITTYEGNHNHP 411 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-33 | 337 | 413 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.81E-28 | 345 | 413 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.516 | 347 | 413 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-37 | 352 | 412 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-26 | 354 | 411 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 628 aa Download sequence Send to blast |
MDKGWGLTLD SDSLGFFLNN NNKRPPHPQH NLNNNNHHQH NKRSISLDNT MFPVNLGRRD 60 YHHHHHEPAA ASSPPSDHVE TRRAVVDEVD FFAKKPRLAS EDADHHDRDD DASKTNRVSV 120 KKENSLGEAP SRPDLDVNTG LHLLTANTGS DQSTVDDGIS SDSDDKRAKI ELAHLQMELQ 180 RMNVENQRLK EMLSQVSNNY SVLHNHLVTL MQQQQTRGAD SAQENEVVEA KSEERKLEVG 240 GSQMVPIQFM NPGPGATAEA DEISNSSSED RTISGSPRNN SNVVKNSEVV PYDSDKDGKR 300 VGREESPESE SQGWVPNKAP KFTPNKPIDQ STEATMRKAR VSVRARSEAP MITDGCQWRK 360 YGQKMAKGNP CPRAYYRCTM AVGCPVRKQV QRCAEDRSIL ITTYEGNHNH PLPPAAMAMA 420 STTTAAASML LSGSMSSADG IMNPNLLARA ILPCSSSMAT ISASAPFPTV TLDLTHTPNP 480 LQFPRPQTQF PIHFPGQGQN GFGSVQPAQL PQVFGQALYN QSKFSGLQLS QDMGHSQLGH 540 QAPQLPLHQT QQQQQPSLAD TVSAATAAIT ADPNFTAALA AAISSIIGGG AHPNNNNTST 600 TATNNNISAS MTTSNSNNSN KIGNFPGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-21 | 339 | 415 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023925140.1 | 0.0 | probable WRKY transcription factor 31 isoform X3 | ||||
Swissprot | Q9C519 | 1e-162 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A2N9H9N3 | 0.0 | A0A2N9H9N3_FAGSY; Uncharacterized protein | ||||
STRING | EOY28756 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-137 | WRKY family protein |