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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
maker-scaffold05550-snap-gene-0.14-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
B3 |
Protein Properties |
Length: 427aa MW: 48473.3 Da PI: 10.339 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold05550-snap-gene-0.14-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 53.1 | 5.8e-17 | 18 | 94 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
++p f++ ++g +k +l+d++g+sW+v l +++ +r + +GW F++++ L+ gDf++Fk+++
maker-scaffold05550-snap-gene-0.14-mRNA-1 18 SIPQAFIKYFNGT--IPKRAILKDQTGKSWRVGL--EQTNRRLCFNSGWHCFASDHSLEFGDFLIFKFNR 83
89****9555555..6778***************..99999**************************988 PP
SSEE..EEEEE-S CS
B3 87 rsefelvvkvfrk 99
+s f vk+f+k
maker-scaffold05550-snap-gene-0.14-mRNA-1 84 SSLF--EVKIFSK 94
7777..9999987 PP
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2 | B3 | 38.3 | 2.3e-12 | 217 | 301 | 14 | 98 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-E CS
B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDf 79
+ +p +fa+++ ++ + ++ l+ ++g W vk+i+r + + lt+G + F ++n+L++ D+
maker-scaffold05550-snap-gene-0.14-mRNA-1 217 FFMHIPHTFAKKYLEE--KCLDVFLRVPEGIAWPVKYIFRTVGTHliAELTSGGRAFSRDNKLEVCDV 282
5689*********533..5679***************99888877677799***************** PP
EEEEE-SSSEE..EEEEE- CS
B3 80 vvFkldgrsefelvvkvfr 98
++F++++ + ++ v +fr
maker-scaffold05550-snap-gene-0.14-mRNA-1 283 CIFEFIKGIDVSFIVNIFR 301
****998766667999887 PP
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3 | B3 | 51.3 | 2e-16 | 348 | 424 | 18 | 98 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE CS
B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkl 84
+p f+++++ ++ ++ + +rsW vkl ++++ y l++GW+ F k+n LkegD+++F+l
maker-scaffold05550-snap-gene-0.14-mRNA-1 348 VPSGFIKKYKRG---TTRTVMLQVANRSWPVKL--LVYPRAsYKLSAGWSAFMKENTLKEGDVCIFEL 410
577777777544...33455566799*******..6666555************************** PP
-SSSEE..EEEEE- CS
B3 85 dgrsefelvvkvfr 98
++r++ ++v +fr
maker-scaffold05550-snap-gene-0.14-mRNA-1 411 IKRDDIVFKVNIFR 424
*9999989999998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 427 aa
Download sequence Send
to blast |
MLNRLISDEN SIYFILQSIP QAFIKYFNGT IPKRAILKDQ TGKSWRVGLE QTNRRLCFNS 60 GWHCFASDHS LEFGDFLIFK FNRSSLFEVK IFSKTGCKKE QAAPIGKPIP FVNLEEDSKT 120 ELTCSRPTRF GKRKRSEVGL KKIEAGGSSE ASRHKLKRTT GTNLTKTPHF DRMRQIGVTV 180 DTIWLKAKVP KEMQNLTANG GSRALETASA FKSGNPFFMH IPHTFAKKYL EEKCLDVFLR 240 VPEGIAWPVK YIFRTVGTHL IAELTSGGRA FSRDNKLEVC DVCIFEFIKG IDVSFIVNIF 300 RVAEDANCCL SPGKPKQLIR EDCTSSRASL ALEAARKFIS ENPFIKDVPS GFIKKYKRGT 360 TRTVMLQVAN RSWPVKLLVY PRASYKLSAG WSAFMKENTL KEGDVCIFEL IKRDDIVFKV 420 NIFRGIN
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 4e-17 | 324 | 424 | 28 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 4e-17 | 324 | 424 | 28 | 141 | B3 domain-containing transcription factor VRN1 |