PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05519-augustus-gene-0.22-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 280aa    MW: 31438.5 Da    PI: 6.6334
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05519-augustus-gene-0.22-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-2095144255
                                            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                                     y+G+r+++ +g+W+AeIrdp     +  r++lg+f taeeAa a+++a+ +++g
  maker-scaffold05519-augustus-gene-0.22-mRNA-1  95 VYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNTAEEAALAYDQAAMRIRG 144
                                                    69*******.**********94....35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.81E-2295153IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-3295153IPR001471AP2/ERF domain
PROSITE profilePS5103223.60495152IPR001471AP2/ERF domain
SMARTSM003801.0E-3695158IPR001471AP2/ERF domain
PfamPF008474.8E-1495144IPR001471AP2/ERF domain
PRINTSPR003671.7E-1196107IPR001471AP2/ERF domain
CDDcd000182.06E-3296154No hitNo description
PRINTSPR003671.7E-11118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MCGGAIISDF VDVKPGGRRL TTEDLWSELD TASNLFGFNS NGALDDFPNS FLHHKVPQKP  60
KQLEKVRSEK RSDTDEKAKQ VAKEEKKKER TRKNVYRGIR QRPWGKWAAE IRDPQKGVRV  120
WLGTFNTAEE AALAYDQAAM RIRGDKAKLN FAHHRHQPPP PPPPPSTPEP PPPAAKKRCI  180
FPESSDSSFE TIEPPPPPPP PPVLLQPLIQ NEICCKNEVA QFDGFELKNQ ISSLESFLGL  240
EPELEPSLGS GSGSEIIESG DLWMLDDLVT HHQQQRQLLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2396151359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2396151662ATERF1
3gcc_A2e-2396151662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894102.11e-161ethylene-responsive transcription factor RAP2-3-like
TrEMBLA0A2N9HGD91e-122A0A2N9HGD9_FAGSY; Uncharacterized protein
STRINGEOY065884e-87(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48923353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-40ethylene-responsive element binding protein