PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02530-augustus-gene-0.31-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 698aa    MW: 77811 Da    PI: 10.4523
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02530-augustus-gene-0.31-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.1e-081044237
                                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
                                Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                                                   ++W t Ed+ll++av ++G+ +W+++a +++ +R+ 
  maker-scaffold02530-augustus-gene-0.31-mRNA-1 10 QPWGTLEDLLLACAVIRHGTASWDSVAMELQ-NRSS 44
                                                   79*****************************.**96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002492.3E-71044IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-41045IPR009057Homeodomain-like
CDDcd001670.005761142No hitNo description
SuperFamilySSF473705.49E-17310429IPR001487Bromodomain
SMARTSM002972.4E-10314427IPR001487Bromodomain
Gene3DG3DSA:1.20.920.107.7E-14323430IPR001487Bromodomain
CDDcd043692.77E-14325422No hitNo description
PROSITE profilePS5001412.057333408IPR001487Bromodomain
PfamPF004398.8E-10337412IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MGREHGTSVQ PWGTLEDLLL ACAVIRHGTA SWDSVAMELQ NRSSSSAATA ATATAMLGIT  60
PLYCKDKFDD LKRRFMARND DESGRIAEEL RRIRVEELKR EVRRRDDSIV SLELKLKRLK  120
EERDRSLKEE SENVDLKKDL EGDAGETTPL PENLAVSGDI SDDKENRSFN ESNSTTQKGE  180
GQARNDAVKV QIRPEPERNE PDPGRTESHP VLNGKVDAND NEIQDDDEEA GEKRKLVGGI  240
MVKPSRAGRL SESNEGLESV GESKREKETA SKQSSDVQSS ASLSRKKRRR KGSSSGGGSS  300
SGEEPEVDEV SPATKRVSAV KSEPLIKLLG IIRSHRLGSV FRAPASEPGG EPESERYKNL  360
IRQHMDLQTV QSRVDRGVYA DNIHKFFRDL LLIFNNGVMF FRKSSPEHVA AQDLRTLVRK  420
ELRNKLRKPQ PPPPHRKTVK LEPKHEPDSL PKPNNKPPTA TLVACGKRSS MKVLTEGAHR  480
KEDKREKEAV GVKPNVVINQ KKNEGTFIKV SGEEKQGIRR KRTRERQGRR SRRTNNNKGG  540
GEIKHEFGGN VLSSHDALEL IKIEKKKEST VKKKKQGAVS FLKRMKQNSP SDQVTEDTDD  600
GSEDDSIESK GEKEEEEKKS KGRKNEGRGE RVTRSSTGGR GTKEENAKSK RGVGRPPKRP  660
ERPETVTVAA ASGKRGRDNS ESEVVGSASS RSRKRPRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284290RKKRRRK
2285290KKRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023903423.10.0eukaryotic translation initiation factor 5B-like
TrEMBLA0A2I4FSM60.0A0A2I4FSM6_JUGRE; uncharacterized protein LOC109001698
STRINGcassava4.1_002976m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-23DNA-binding bromodomain-containing protein