PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold02285-augustus-gene-0.24-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | SBP | ||||||||
Protein Properties | Length: 999aa MW: 110846 Da PI: 6.0166 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.3 | 6.8e-41 | 154 | 231 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-ST CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrr 64 +Cqve+C adl++ak+yhrrhkvCe hska+++lv ++ qrfCqqCsrfh l+efDe+krsCrr maker-scaffold02285-augustus-gene-0.24-mRNA-1 154 VCQVEDCGADLNNAKDYHRRHKVCELHSKASKALVGNTWQRFCQQCSRFHVLQEFDEGKRSCRR 217 6*************************************************************** PP TTT-------S--- CS SBP 65 rLakhnerrrkkqa 78 rLa+hn+rrrk+++ maker-scaffold02285-augustus-gene-0.24-mRNA-1 218 RLAGHNKRRRKTNP 231 ***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.1E-32 | 149 | 216 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.855 | 152 | 229 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.88E-38 | 153 | 234 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.0E-29 | 155 | 228 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:1.25.40.20 | 1.8E-6 | 303 | 332 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 6.93E-7 | 774 | 884 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.31E-6 | 776 | 884 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 1.8E-6 | 776 | 885 | IPR020683 | Ankyrin repeat-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 999 aa Download sequence Send to blast |
MEARFGGEAH RFYAMSAADL RAMGKRTSDW DSNDWKWDGD LFIASRLNPL PSDSVGQQFF 60 PIGSEIPVNG GSSNSSSSCS DEVSLGLEKG KRELEKRRRV IVVEDDNLND EEAGNLALKL 120 GGQGYQVTER EVGNWEGTSG KKTKLVGSTS NRAVCQVEDC GADLNNAKDY HRRHKVCELH 180 SKASKALVGN TWQRFCQQCS RFHVLQEFDE GKRSCRRRLA GHNKRRRKTN PDPVVNGNTL 240 NDDQTSGYLL ISLLRILSNL HSNRSDQTTE QDVLSHLLRS LANQTAEHGG KDISGVLREP 300 SNLASLGNSE LLSALLSNGL QGPSRPFKQH QPVPVSEIPR QGLSVDDTRV GDIQNMSSKP 360 SILNSPPAYS EVRDSSAGQI KMNNFDLNDI YIDSDDGMED MERSPIPVNM GTSSLDSHQS 420 SPPQTSGNSD SASAQSPSSS SGEAQSRTDR IVFKLFGKDP NDFPHVLRAQ ILDWLSHSPT 480 DIESYIRPGC IVLTIYLHQA EAAWEELCYD LSSSLNRLLD ASDDSFWRTG WVYVRVQHQI 540 AFIYDGQVII DTSLPLRSNN YSKILSVKPV AISTTERAQF LVKGINLTRP TTRLLCALEG 600 NYLVEENTYD SMDSLNTLNE NDELRCINFS CSIPAVNGRG FIEIEDHGFS STFFPFIVAE 660 EDVCSEIRAL ESELELSETN ADLGGSGRME TKNQALGFIN EMGWLLHRSQ LKSRLGNMDL 720 NPESFHLKRF KWLMEFSMDH DWCAVVRKLL GILLDETVGA GEHSSLNLAL VEMGLLHRAV 780 RRNSRALVEL LLRYQISDQL ISENKSLVDG GKGGFLFRPD VVGPSGLTPL HIAAGKDGSE 840 NVLDALTDDP KMVGIEAWNS ARDSTGSTPE DYARLRGHYS YIHLVQKKIN KKSAAEHVVL 900 DIPSVLSDCS VNKKQNNELT STFEIKGTDL KCIRQQCKLC DRKLAYGTGS RFLVYRPVML 960 SMVAIAAVCV CVALLFKSSP EVLFVFRPFS WEALAFGSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-30 | 154 | 228 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 99 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00633 | PBM | Transfer from PK06791.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023893498.1 | 0.0 | squamosa promoter-binding-like protein 1 | ||||
Swissprot | Q9S7P5 | 0.0 | SPL12_ARATH; Squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A2N9HD86 | 0.0 | A0A2N9HD86_FAGSY; Uncharacterized protein | ||||
STRING | XP_002515202.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1539 | 34 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60030.1 | 0.0 | squamosa promoter-binding protein-like 12 |
Publications ? help Back to Top | |||
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