PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK06791.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

SBP

Protein Properties

Length: 1013aa MW: 112059 Da PI: 6.3796

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK06791.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132	2.1e-41	153	230	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adl++ak+yhrrhkvCe+hska ++lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++ PK06791.1 153 ICQVEDCGADLTNAKDYHRRHKVCEMHSKAVKALVGNVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTNP 230 5**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.5E-33	147	215	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.052	151	228	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.7E-38	152	233	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	9.6E-30	154	227	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	6.88E-7	782	895	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.7E-6	783	897	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.08E-6	783	901	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1013 aa Download sequence Send to blast
MEARFGGEPR HFFGMSSADL TTVRKRTMEW DLNQWKWDGD LFIASSVNPA VPSEGMGRQF 60 FPAGGSCNSN TSSSCSDEGN LVIEKGKREL EKRRRDNTVE DENLNDGTGN LTLMLGGRGH 120 HLHQQASERE MVNWEGNSGK KTKFVGGTSS RAICQVEDCG ADLTNAKDYH RRHKVCEMHS 180 KAVKALVGNV MQRFCQQCSR FHALQEFDEG KRSCRRRLAG HNKRRRKTNP DTAANGNSLS 240 DDQTSGYLLI SLLRILSNMH SNKPDQSTEQ DLLSHLLKSL ANQTSEQGGK SVAGLLRDPQ 300 NLLTDGTSVG NSEVVSAFLS NGSQGPPRPT KQNHAVSISE IPQQDIHLHN TNGGSVQATS 360 EKPSIINSPP SYSEARDSTA GHSKMNNFDL NDIYIDSDDG VEDPERSSPP TNLVTSSLDC 420 PSWVQQDSHQ SSPPQTNSDS ASAQSPSSSN GEAQSRTDRI VFKLFGKEPN DFPLVLRAQI 480 LDWLSHSPSD IESYIKPGCI ILTIYLRQSD SAWEELCYDI SSKLSRLLDV SDDTFWSTGW 540 TFIRVQHQIA FVCNGQVIVD TSLPLRSSNC SKIVSIKPIA LPASKKAQFL VRGTNLVRPT 600 TRLFCALEGK YLVQEATHEL MDGVDNSEHD EHCISFSCPI DVTNGRGFIE IEDQGLGNSF 660 FPFLVAEEDV CSEIRVLESV LEYTESHAVV GGIGKPESYN QAMDFIHEMG WLLHRSQLRS 720 RLGELDPNAE PFSLKRFKWI MEFSVDHDWC AVVRKLLDIL IDGSIGEGED RSLDLALSEI 780 GLLHRAVRRN SKALVEALLK YAPKDLSKLE SEEKSATHGP SSNFLFRPDV AGPGGLTPLH 840 IAAGKDGSED VLDALTNDPG MVGIEAWKSA RDSTGSTPED YARLRGHYTY IRLIQRKINK 900 NSGSGHVVVD IPGDQKHCGA NQKQNELANT TTATTTFEIG RSEQRRIQRP CGLCDRKLAY 960 GTSRRSVVYR PAMLSMVAIA AVCVCVALLF KSSPEVLYVF QPFRWEMLEF GTS

Sequence ? help Back to Top

Protein Sequence Length: 1013 aa Download sequence Send to blast

MEARFGGEPR HFFGMSSADL TTVRKRTMEW DLNQWKWDGD LFIASSVNPA VPSEGMGRQF  60
FPAGGSCNSN TSSSCSDEGN LVIEKGKREL EKRRRDNTVE DENLNDGTGN LTLMLGGRGH  120
HLHQQASERE MVNWEGNSGK KTKFVGGTSS RAICQVEDCG ADLTNAKDYH RRHKVCEMHS  180
KAVKALVGNV MQRFCQQCSR FHALQEFDEG KRSCRRRLAG HNKRRRKTNP DTAANGNSLS  240
DDQTSGYLLI SLLRILSNMH SNKPDQSTEQ DLLSHLLKSL ANQTSEQGGK SVAGLLRDPQ  300
NLLTDGTSVG NSEVVSAFLS NGSQGPPRPT KQNHAVSISE IPQQDIHLHN TNGGSVQATS  360
EKPSIINSPP SYSEARDSTA GHSKMNNFDL NDIYIDSDDG VEDPERSSPP TNLVTSSLDC  420
PSWVQQDSHQ SSPPQTNSDS ASAQSPSSSN GEAQSRTDRI VFKLFGKEPN DFPLVLRAQI  480
LDWLSHSPSD IESYIKPGCI ILTIYLRQSD SAWEELCYDI SSKLSRLLDV SDDTFWSTGW  540
TFIRVQHQIA FVCNGQVIVD TSLPLRSSNC SKIVSIKPIA LPASKKAQFL VRGTNLVRPT  600
TRLFCALEGK YLVQEATHEL MDGVDNSEHD EHCISFSCPI DVTNGRGFIE IEDQGLGNSF  660
FPFLVAEEDV CSEIRVLESV LEYTESHAVV GGIGKPESYN QAMDFIHEMG WLLHRSQLRS  720
RLGELDPNAE PFSLKRFKWI MEFSVDHDWC AVVRKLLDIL IDGSIGEGED RSLDLALSEI  780
GLLHRAVRRN SKALVEALLK YAPKDLSKLE SEEKSATHGP SSNFLFRPDV AGPGGLTPLH  840
IAAGKDGSED VLDALTNDPG MVGIEAWKSA RDSTGSTPED YARLRGHYTY IRLIQRKINK  900
NSGSGHVVVD IPGDQKHCGA NQKQNELANT TTATTTFEIG RSEQRRIQRP CGLCDRKLAY  960
GTSRRSVVYR PAMLSMVAIA AVCVCVALLF KSSPEVLYVF QPFRWEMLEF GTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-31	147	227	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	25215497	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010091413.1	0.0	squamosa promoter-binding-like protein 1
Refseq	XP_024018150.1	0.0	squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A2P5ETD2	0.0	A0A2P5ETD2_TREOI; SBP-box transcription factor
STRING	XP_010091413.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]