![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
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TF ID |
maker-scaffold02060-augustus-gene-0.31-mRNA-1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
Family |
LFY |
Protein Properties |
Length: 386aa MW: 43438.8 Da PI: 7.3581 |
Description |
LFY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold02060-augustus-gene-0.31-mRNA-1 | genome | THGP | View Nucleic Acid |
|
Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Cmo&pid=maker-scaffold02060-augustus-gene-0.31-mRNA-1) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | FLO_LFY | 645.6 | 7e-197 | 1 | 372 | 1 | 386 |
FLO_LFY 1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvrylt 64
mdp+ f+aslfkwdpr ++ a+++rlle a ++++++a ++ r+l +leelf+ayG+ry+t
maker-scaffold02060-augustus-gene-0.31-mRNA-1 1 MDPDPFTASLFKWDPRGVVPAATNRLLEAVA-PPQAAAAVYSVRPRELGGLEELFQAYGIRYYT 63
9***************999888888876654.44444667777788899*************** PP
FLO_LFY 65 vakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekk 128
+a+iaelGftv+tLvdmkd+eldd+m+sls+ifr+dllvGeryGikaavraerrrl+ee+ ++
maker-scaffold02060-augustus-gene-0.31-mRNA-1 64 AARIAELGFTVNTLVDMKDNELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRLDEED--SR 125
**********************************************************88..89 PP
FLO_LFY 129 rrkllsedeet.aldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskk 191
rr+lls d++t aldalsqeglseepvq+ekea+gsgg+g ++e+va ++k+
maker-scaffold02060-augustus-gene-0.31-mRNA-1 126 RRHLLSPDTTTnALDALSQEGLSEEPVQQEKEAMGSGGGG--TWEAVAGGG------RRKQ--- 178
999999998777************************9999..999999873......2333... PP
FLO_LFY 192 kqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdL 255
++rk +++++ +++d+e d+d++ +g+ g+erqrehPfivtepgevargkknGLDYLf+L
maker-scaffold02060-augustus-gene-0.31-mRNA-1 179 -RRRKGQRKVVDVDHDDDELGADHDDDMNGNVGSERQREHPFIVTEPGEVARGKKNGLDYLFHL 241
.2333333333344455555677778888999******************************** PP
FLO_LFY 256 yeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeas 319
yeqCr+fL+qvq+iakerGekcPtkvtnqvfr+akkagasyinkPkmrhYvhCYalhcLdeeas
maker-scaffold02060-augustus-gene-0.31-mRNA-1 242 YEQCRDFLIQVQNIAKERGEKCPTKVTNQVFRFAKKAGASYINKPKMRHYVHCYALHCLDEEAS 305
**************************************************************** PP
FLO_LFY 320 nalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlers 383
nalrr fkergenvGawrqacykplvaiaarqgwdida+fnahprLs+WYvPtkLrqLCh+er+
maker-scaffold02060-augustus-gene-0.31-mRNA-1 306 NALRRGFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSVWYVPTKLRQLCHAERN 369
***************************************************************9 PP
FLO_LFY 384 kas 386
+a+
maker-scaffold02060-augustus-gene-0.31-mRNA-1 370 HAT 372
876 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity |
GO:0010582 | Biological Process | floral meristem determinacy |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0031490 | Molecular Function | chromatin DNA binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
Protein Sequence Length: 386 aa
Download sequence Send
to blast |
MDPDPFTASL FKWDPRGVVP AATNRLLEAV APPQAAAAVY SVRPRELGGL EELFQAYGIR 60 YYTAARIAEL GFTVNTLVDM KDNELDDMMN SLSQIFRWDL LVGERYGIKA AVRAERRRLD 120 EEDSRRRHLL SPDTTTNALD ALSQEGLSEE PVQQEKEAMG SGGGGTWEAV AGGGRRKQRR 180 RKGQRKVVDV DHDDDELGAD HDDDMNGNVG SERQREHPFI VTEPGEVARG KKNGLDYLFH 240 LYEQCRDFLI QVQNIAKERG EKCPTKVTNQ VFRFAKKAGA SYINKPKMRH YVHCYALHCL 300 DEEASNALRR GFKERGENVG AWRQACYKPL VAIAARQGWD IDAIFNAHPR LSVWYVPTKL 360 RQLCHAERNH ATASSSVSGG ADHMPF
|
Nucleic Localization
Signal ? help
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![NLS](draw_nls.php?sp=Cmo&pid=maker-scaffold02060-augustus-gene-0.31-mRNA-1) |
No. |
Start |
End |
Sequence |
1 | 174 | 181 | RRKQRRRK |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JQ825167 | 0.0 | JQ825167.1 Castanea henryi leafy-like protein mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G61850.1 | 1e-110 | floral meristem identity control protein LEAFY (LFY) |