PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02060-augustus-gene-0.31-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family LFY
Protein Properties Length: 386aa    MW: 43438.8 Da    PI: 7.3581
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02060-augustus-gene-0.31-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY645.67e-19713721386
                                        FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvrylt 64 
                                                    mdp+ f+aslfkwdpr ++ a+++rlle  a ++++++a  ++  r+l +leelf+ayG+ry+t
  maker-scaffold02060-augustus-gene-0.31-mRNA-1   1 MDPDPFTASLFKWDPRGVVPAATNRLLEAVA-PPQAAAAVYSVRPRELGGLEELFQAYGIRYYT 63 
                                                    9***************999888888876654.44444667777788899*************** PP

                                        FLO_LFY  65 vakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekk 128
                                                    +a+iaelGftv+tLvdmkd+eldd+m+sls+ifr+dllvGeryGikaavraerrrl+ee+  ++
  maker-scaffold02060-augustus-gene-0.31-mRNA-1  64 AARIAELGFTVNTLVDMKDNELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRLDEED--SR 125
                                                    **********************************************************88..89 PP

                                        FLO_LFY 129 rrkllsedeet.aldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskk 191
                                                    rr+lls d++t aldalsqeglseepvq+ekea+gsgg+g  ++e+va         ++k+   
  maker-scaffold02060-augustus-gene-0.31-mRNA-1 126 RRHLLSPDTTTnALDALSQEGLSEEPVQQEKEAMGSGGGG--TWEAVAGGG------RRKQ--- 178
                                                    999999998777************************9999..999999873......2333... PP

                                        FLO_LFY 192 kqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdL 255
                                                     ++rk +++++  +++d+e   d+d++ +g+ g+erqrehPfivtepgevargkknGLDYLf+L
  maker-scaffold02060-augustus-gene-0.31-mRNA-1 179 -RRRKGQRKVVDVDHDDDELGADHDDDMNGNVGSERQREHPFIVTEPGEVARGKKNGLDYLFHL 241
                                                    .2333333333344455555677778888999******************************** PP

                                        FLO_LFY 256 yeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeas 319
                                                    yeqCr+fL+qvq+iakerGekcPtkvtnqvfr+akkagasyinkPkmrhYvhCYalhcLdeeas
  maker-scaffold02060-augustus-gene-0.31-mRNA-1 242 YEQCRDFLIQVQNIAKERGEKCPTKVTNQVFRFAKKAGASYINKPKMRHYVHCYALHCLDEEAS 305
                                                    **************************************************************** PP

                                        FLO_LFY 320 nalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlers 383
                                                    nalrr fkergenvGawrqacykplvaiaarqgwdida+fnahprLs+WYvPtkLrqLCh+er+
  maker-scaffold02060-augustus-gene-0.31-mRNA-1 306 NALRRGFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSVWYVPTKLRQLCHAERN 369
                                                    ***************************************************************9 PP

                                        FLO_LFY 384 kas 386
                                                    +a+
  maker-scaffold02060-augustus-gene-0.31-mRNA-1 370 HAT 372
                                                    876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.5E-2071371IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDPDPFTASL FKWDPRGVVP AATNRLLEAV APPQAAAAVY SVRPRELGGL EELFQAYGIR  60
YYTAARIAEL GFTVNTLVDM KDNELDDMMN SLSQIFRWDL LVGERYGIKA AVRAERRRLD  120
EEDSRRRHLL SPDTTTNALD ALSQEGLSEE PVQQEKEAMG SGGGGTWEAV AGGGRRKQRR  180
RKGQRKVVDV DHDDDELGAD HDDDMNGNVG SERQREHPFI VTEPGEVARG KKNGLDYLFH  240
LYEQCRDFLI QVQNIAKERG EKCPTKVTNQ VFRFAKKAGA SYINKPKMRH YVHCYALHCL  300
DEEASNALRR GFKERGENVG AWRQACYKPL VAIAARQGWD IDAIFNAHPR LSVWYVPTKL  360
RQLCHAERNH ATASSSVSGG ADHMPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1102093701162PROTEIN LEAFY
2vy2_A1e-1102093701162PROTEIN LEAFY
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174181RRKQRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8251670.0JQ825167.1 Castanea henryi leafy-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023902312.10.0floricaula/leafy homolog
SwissprotO040640.0FLLH_POPTR; Floricaula/leafy homolog
TrEMBLQ2XPH10.0Q2XPH1_9ROSI; Leafy-like protein
STRINGEOY226620.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-110floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]