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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
maker-scaffold01802-augustus-gene-0.20-mRNA-1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
| Family |
LSD |
| Protein Properties |
Length: 174aa MW: 18334.2 Da PI: 8.3185 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold01802-augustus-gene-0.20-mRNA-1 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 39.4 | 9.9e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr +L YP GA++V+CalC+tV
maker-scaffold01802-augustus-gene-0.20-mRNA-1 7 CNGCRSVLLYPGGATNVCCALCNTV 31
************************9 PP
|
| 2 | zf-LSD1 | 38 | 2.7e-12 | 44 | 68 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C gCrtlL+Y+r A+sVRC++C tV
maker-scaffold01802-augustus-gene-0.20-mRNA-1 44 CAGCRTLLMYTRAATSVRCSCCSTV 68
***********************99 PP
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| 3 | zf-LSD1 | 46.7 | 5e-15 | 82 | 106 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+Crt+L+YP+GApsV+Ca+C+ V
maker-scaffold01802-augustus-gene-0.20-mRNA-1 82 CGSCRTMLMYPYGAPSVKCAVCHYV 106
**********************987 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0000303 | Biological Process | response to superoxide |
| GO:0001666 | Biological Process | response to hypoxia |
| GO:0002240 | Biological Process | response to molecule of oomycetes origin |
| GO:0009626 | Biological Process | plant-type hypersensitive response |
| GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway |
| GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway |
| GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process |
| GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process |
| GO:0010618 | Biological Process | aerenchyma formation |
| GO:0043069 | Biological Process | negative regulation of programmed cell death |
| Sequence ? help Back to Top |
| Protein Sequence Length: 174 aa
Download sequence Send
to blast |
MQSQLVCNGC RSVLLYPGGA TNVCCALCNT VTPVPGTEMA QLVCAGCRTL LMYTRAATSV 60
RCSCCSTVNL APVPTQYAHV NCGSCRTMLM YPYGAPSVKC AVCHYVTNVG MANARLPIPM 120
HRPNGTAYSG TTPSTSTSTP YSQSQTVVVE NPMSFDESGK LVSNVVVGVT TDKK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
