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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01024-augustus-gene-0.33-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB_related | ||||||||
Protein Properties | Length: 87aa MW: 9977.1 Da PI: 4.5218 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.2 | 1e-09 | 25 | 80 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwq 45 ++ ++++E+ l+ + +++ G +W++Ia +++ gRt++++k +w maker-scaffold01024-augustus-gene-0.33-mRNA-1 25 KLEFSEDEETLITRMFNLVGESfnelmrkivlilRWTLIAGRIP-GRTAEEIKKYWT 80 678*****************99**********************.***********5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.911 | 20 | 83 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.0E-5 | 24 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-8 | 26 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.39E-6 | 27 | 79 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-10 | 27 | 81 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.72E-6 | 28 | 83 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MADLDHTSDG SSVDSRGESN SQDSKLEFSE DEETLITRMF NLVGESFNEL MRKIVLILRW 60 TLIAGRIPGR TAEEIKKYWT SRYSTSE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023875995.1 | 5e-42 | transcription factor CPC-like isoform X2 | ||||
TrEMBL | D7TEM7 | 1e-35 | D7TEM7_VITVI; Uncharacterized protein | ||||
STRING | VIT_12s0059g02360.t01 | 2e-36 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2692 | 31 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46410.1 | 6e-14 | MYB_related family protein |