PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00958-augustus-gene-0.28-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 187aa    MW: 20803.5 Da    PI: 8.9003
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00958-augustus-gene-0.28-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.8e-20555155
                                            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                                                   ++++GVr+++ +g+WvAeIr+p        +r++lg+f taeeAa+a+++a+  + g
  maker-scaffold00958-augustus-gene-0.28-mRNA-1  5 KKFRGVRQRH-WGSWVAEIRHP-----LlkRRVWLGTFETAEEAARAYDEAAILMSG 55
                                                   59*******9.**********8.....334*********************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.66E-34565No hitNo description
PfamPF008473.1E-13653IPR001471AP2/ERF domain
PROSITE profilePS5103222.3663IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-21664IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-33663IPR001471AP2/ERF domain
SMARTSM003804.4E-40669IPR001471AP2/ERF domain
PRINTSPR003671.1E-10718IPR001471AP2/ERF domain
PRINTSPR003671.1E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MVQSKKFRGV RQRHWGSWVA EIRHPLLKRR VWLGTFETAE EAARAYDEAA ILMSGRNAKT  60
NFPVVTNQIG NDNNSNTSSS NNALSKVLSA KLRKCCKLPS PSLTCLRLDT ENSHIGVWQK  120
RAGTSSDSNW VMMVELGEKS GQAVPEKNLP AVSNTAEIEA RQPEGGDGIN EEERVALQMI  180
EELLNRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-17267167ATERF1
3gcc_A1e-17267167ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8425965e-50HQ842596.1 Rosa chinensis clone 2 putative AP2 domain protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023873015.11e-120ethylene-responsive transcription factor WIN1-like
SwissprotQ9XI339e-79WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A2N9HZG51e-104A0A2N9HZG5_FAGSY; Uncharacterized protein
STRINGXP_008243869.11e-91(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.12e-67ERF family protein
Publications ? help Back to Top
  1. Taketa S, et al.
    Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7
    [PMID:18316719]
  2. Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S
    Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato.
    Int J Mol Sci, 2014. 15(11): p. 19499-515
    [PMID:25350113]
  3. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  4. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]
  5. Sajeevan RS, et al.
    Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss.
    Front Plant Sci, 2017. 8: p. 418
    [PMID:28421085]