PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00371-augustus-gene-0.25-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 341aa    MW: 38499.9 Da    PI: 6.995
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00371-augustus-gene-0.25-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-05180199120
                                                    EEETTTTEEESSHHHHHHHH CS
                                        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                                    ++Cp C k+F+r  n++ H+
  maker-scaffold00371-augustus-gene-0.25-mRNA-1 180 FSCPLCFKTFNRYNNMQMHM 199
                                                    89*****************9 PP
2zf-C2H214.69.6e-05264286123
                                                    EEETTTTEEESSHHHHHHHHHHT CS
                                        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                    + C +Cgk F  + + ++H +++
  maker-scaffold00371-augustus-gene-0.25-mRNA-1 264 FMCRKCGKAFAVRGDWRTHEKNC 286
                                                    89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-5180199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.61180202IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66180207IPR007087Zinc finger, C2H2
PROSITE patternPS000280182202IPR007087Zinc finger, C2H2
SuperFamilySSF576671.37E-6245284No hitNo description
Gene3DG3DSA:3.30.160.609.1E-6260284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549264284IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808264284IPR007087Zinc finger, C2H2
SMARTSM00355190290313IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MTDPYSNHFS GWFNLNSLYH YSSSTSSTPS FYSSPYDYCS NNNINVNTTN SFTYFEPSPP  60
SPPLREALPL LSLSPTRHEE QESSSSYMEV DKNKLDKDKE EFLFSSTSAA SNDDDPAVAV  120
ALHLGLPSPS SADLISSLSS TEISDKDEVT VASGYLPDRL NKGQYWIPTP AQILIGPTQF  180
SCPLCFKTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTA MLRLPCYCCA PGCRNNIDHP  240
RSKPLKDFRT LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR THEKNCGKLW YCTCGSDFKH  300
KRSLKDHIKA FGHGHAAFGI DCFEEEDEAT SEIEQDNDSS Q
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0956331e-157BT095633.1 Soybean clone JCVI-FLGm-19L21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023907401.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-141ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2I4DJY30.0A0A2I4DJY3_JUGRE; zinc finger protein WIP2-like
STRINGVIT_06s0004g01870.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-130C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]