PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00127-augustus-gene-0.31-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 372aa    MW: 41888.6 Da    PI: 5.6091
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00127-augustus-gene-0.31-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding507.1e-161461148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   +g W++eEde+l + ++++G g+W+++++  g+ R++k+c++rw +yl
  maker-scaffold00127-augustus-gene-0.31-mRNA-1 14 KGLWSPEEDEKLFNHITRFGIGCWSSVPKQAGLQRCGKSCRLRWINYL 61
                                                   678*******************************************97 PP
2Myb_DNA-binding44.53.5e-1467110146
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                                    rg ++++E++l+  +++ lG++ W+ Ia+ ++ gRt++++k++w++
  maker-scaffold00127-augustus-gene-0.31-mRNA-1  67 RGMFSQQEEDLIMSLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                                                    788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-25664IPR009057Homeodomain-like
PROSITE profilePS5129416.524961IPR017930Myb domain
SuperFamilySSF466892.09E-2812108IPR009057Homeodomain-like
SMARTSM007176.1E-111363IPR001005SANT/Myb domain
PfamPF002494.8E-131461IPR001005SANT/Myb domain
CDDcd001672.15E-101761No hitNo description
PROSITE profilePS5129424.02862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2565116IPR009057Homeodomain-like
SMARTSM007173.5E-1266114IPR001005SANT/Myb domain
PfamPF002493.0E-1367111IPR001005SANT/Myb domain
CDDcd001673.13E-970109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGRHSCCLKQ KLRKGLWSPE EDEKLFNHIT RFGIGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLIMS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG  120
IDPSTHKPLS KVEPKDEKKC TETTCFQSRG LPSSTVSTMA SQGGPAFLVD DSNYYDHNGL  180
TEASRELFMY KPSFDPMSCF EFQAGVDSNG YTSTFVPDQN HHTNIKPDID QSQFETNSNY  240
GFTSMPGLTN SDHGNLSSAE FSDNSGSKMS SFFMNNEVKE SSSNSSNMSS YAGFPVNDIM  300
LENAAYSSWD SDTKLESLFQ FQVNEIKTEE LKAGSWQEGQ LQAHNSVDFG SYPLTSLSED  360
LTGAHFDVFQ QI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28121165108B-MYB
1h8a_C4e-28711620128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023924264.10.0transcription factor MYB86-like
TrEMBLA0A2N9GVU20.0A0A2N9GVU2_FAGSY; Uncharacterized protein
STRINGEOY208351e-178(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58313353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.32e-81myb domain protein 55