PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00591_0040
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family NF-YC
Protein Properties Length: 284aa    MW: 31690.8 Da    PI: 5.2836
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00591_0040genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC172.74e-54791821101
          NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 
                    ql+ fw++q   ie++t+fkn +lP+arikki+kadedv+misaeaPvl++kace+fileltlrsw+h+eenkrrtl+++diaaa+t+tdifdflv
  kfl00591_0040  79 QLQLFWQQQmteIEQVTEFKNAQLPFARIKKIMKADEDVRMISAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQRNDIAAAITKTDIFDFLV 174
                    89******988889********************************************************************************** PP

          NF-YC  94 divprdel 101
                    divprd+l
  kfl00591_0040 175 DIVPRDDL 182
                    ******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.19E-3350173IPR009072Histone-fold
PfamPF008083.5E-21101164IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.9E-37102179IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSQQPAPYGA GQYPGVPPGG QLTPAQYQQP PPPAGSMSPQ QGMAAVPQQS PQQQQYTQQQ  60
QFQQSQLQFQ QTQAQHRAQL QLFWQQQMTE IEQVTEFKNA QLPFARIKKI MKADEDVRMI  120
SAEAPVLFAK ACEMFILELT LRSWIHTEEN KRRTLQRNDI AAAITKTDIF DFLVDIVPRD  180
DLKDLPQEEG LALARPPVAL PGPGDQMQYG GMYGYAQPAA YAQNPAYVGR PVDPGYYQAP  240
PQARAPVQYM PPQAAQPQYW HQQPPMAQPQ QIGGPPPDGA VQQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-5487179395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157RRTLQRN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022968781.12e-66nuclear transcription factor Y subunit C-9-like
TrEMBLA0A1Y1IN370.0A0A1Y1IN37_KLENI; CCAAT-binding factor subunit C
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-60nuclear factor Y, subunit C2