PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pm.chr_1_#_161
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family ERF
Protein Properties Length: 424aa    MW: 42938.2 Da    PI: 10.5846
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pm.chr_1_#_161genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83e-19217267155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GVr+++ +g+++AeIrdp+    r  r +lg+f++aeeAa a++aa+++++g
  fgenesh1_pm.chr_1_#_161 217 SVYRGVRQRP-WGKYAAEIRDPT----RgSRLWLGTFDSAEEAALAYDAAARAIRG 267
                              78********.**********84....35***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.61E-17217274No hitNo description
SuperFamilySSF541717.19E-22217275IPR016177DNA-binding domain
PfamPF008475.7E-13217267IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-30218275IPR001471AP2/ERF domain
PROSITE profilePS5103222.471218275IPR001471AP2/ERF domain
SMARTSM003803.2E-34218281IPR001471AP2/ERF domain
PRINTSPR003672.4E-10219230IPR001471AP2/ERF domain
PRINTSPR003672.4E-10241257IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MNGSASDGRY GSGAVGVHAE AGALAGSLSA FVAAQRGGGA PTRGFSVGSA PGFYRVGGHG  60
VNGGGMMPAT PNFLPGVSPS SLGSSPSFYG SSPTAIPQVM RPKAPLQERG IGFPGLSSSL  120
PGKHHIGSPN SGFSAFSPPA NLKDPPRAAM AHFSSSPSVK SGGVQKPPTS ASKVKKMEMA  180
KVAVNEATAA AVAVASMPTS AAAASPSLNS SGKPQKSVYR GVRQRPWGKY AAEIRDPTRG  240
SRLWLGTFDS AEEAALAYDA AARAIRGDSA VTNFGKDVPI PASVRSQLPP LPTRPVSGRG  300
GVARDDSALT GRMSKLSTST KGVNLEEEAE MLLMLQGADS ETKTSTPEKS MEESAEDQAV  360
GMDLEEVNGA SSVTVGLTLR AQKSNAPPAA APAASMFPSS DGSNAMISAL NASTTTRPRR  420
AKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20219274662ATERF1
3gcc_A2e-20219274662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001415607.10.0predicted protein
TrEMBLA4RRP60.0A4RRP6_OSTLU; Uncharacterized protein
STRINGABO938990.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-17ethylene response factor 110