PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00097.53
Common NameAMTR_s00097p00165740, LOC18429865
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 330aa    MW: 36840.8 Da    PI: 4.7044
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00097.53genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.5e-20124174155
                                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                              ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAak +++a+ +l+g
  evm_27.model.AmTr_v1.0_scaffold00097.53 124 KKFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAKVYDNAAIQLRG 174
                                              59********.**********82....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.59E-30124181No hitNo description
Gene3DG3DSA:3.30.730.102.1E-29125182IPR001471AP2/ERF domain
PROSITE profilePS5103223.393125182IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-21125182IPR016177DNA-binding domain
PfamPF008474.5E-13125174IPR001471AP2/ERF domain
SMARTSM003801.8E-35125188IPR001471AP2/ERF domain
PRINTSPR003672.8E-10126137IPR001471AP2/ERF domain
PRINTSPR003672.8E-10148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDFLSFPPIK FSEHRQSVNK LYPSIRKPRP FSGKGNEPDN SSPKLVRVSV TDADATDSSS  60
DEEDNSSSCS YSTGFSRQRV KRYVHEINIQ LCSREGAGSA DVKTRRRTAR KSGFPAIQRR  120
SVGKKFRGVR QRPWGKWAAE IRDPARRVRL WLGTYDTAEE AAKVYDNAAI QLRGPGAPTN  180
FSPPPADIPA TNSPETHDLP AKNAPEYTAS SYDSGEETPN LSSPTSVLRY GMDASEPLKL  240
VEGGFPEPSP FSPEKLPFFP DDLEFSPEYL PDLWPEDFEE FLVDDFLADF GDRRVLERSP  300
IWSDLEDEKL EVADFFYDAD LSSTAISPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-18123181362ATERF1
3gcc_A1e-18123181362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006839201.10.0ethylene-responsive transcription factor CRF1
TrEMBLW1P4900.0W1P490_AMBTC; Uncharacterized protein
STRINGERN017700.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-39cytokinin response factor 4
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]