PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00077.139
Common NameAMTR_s00077p00141890, LOC18432386
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 330aa    MW: 36728.9 Da    PI: 9.2148
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00077.139genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77.1e-19163212356
                                       AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                                               ++GVr++  +grW+AeIrd +     r  r++lg+++taeeAa+ ++aa+ +l+g+
  evm_27.model.AmTr_v1.0_scaffold00077.139 163 FRGVRRRQ-WGRWAAEIRDpF-----RrVRVWLGTYDTAEEAAAVYDAAAVRLNGH 212
                                               8****887.**********66.....45*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.0E-31162225IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-27162219IPR001471AP2/ERF domain
PROSITE profilePS5103222.879162219IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-20162219IPR016177DNA-binding domain
CDDcd000186.28E-16163218No hitNo description
PfamPF008471.7E-11163212IPR001471AP2/ERF domain
PRINTSPR003672.3E-9163174IPR001471AP2/ERF domain
PRINTSPR003672.3E-9185201IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MATIKYSEHK VTCRKTFSGH CFPIKNRDPG RLSTEKLKVV RVVFTDTDAT DSSSDEDEDH  60
LLSFRRTRVK RHVHEITIQR SPIDRLETAL NRHESNHETA VRPEDSQKTA LDGETLPQNR  120
GTGRENRRKT AAGREAGWPH MRKTALGREN GRKTGEVGRR TAFRGVRRRQ WGRWAAEIRD  180
PFRRVRVWLG TYDTAEEAAA VYDAAAVRLN GHKAVTNFCK RTENQNKPVS VKLQGSPNRF  240
PLDNGGFRSV SSPTSVLLNG EYLTPPRQWG GEGMECLGLG DGVIDPFGIG ALALDGVSNA  300
VSFGGNGSEF ADDFGELGWD DFFVDIGEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-15163224668ATERF1
3gcc_A4e-15163224668ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006842557.10.0pathogenesis-related genes transcriptional activator PTI6
RefseqXP_020521684.10.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLW1P3170.0W1P317_AMBTC; Uncharacterized protein
STRINGERN042320.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-09cytokinin response factor 4
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]