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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm_27.model.AmTr_v1.0_scaffold00076.56 |
Common Name | AMTR_s00076p00157170, LOC18432854 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family |
MYB |
Protein Properties |
Length: 352aa MW: 39154.7 Da PI: 8.0567 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm_27.model.AmTr_v1.0_scaffold00076.56 | genome | TAGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 49.6 | 9.4e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
+g+W+++Ed++l++++++ G+g +W + +++ g++R++k+c++rw++yl
evm_27.model.AmTr_v1.0_scaffold00076.56 14 KGPWSPDEDLKLKEYIEKNGTGgNWISLPQKAGLKRCGKSCRLRWLNYL 62
79*********************************************97 PP
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2 | Myb_DNA-binding | 41.4 | 3.2e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g ++ eEd ++ ++++ G++ W+ Ia+ ++ gRt++++k++w++
evm_27.model.AmTr_v1.0_scaffold00076.56 69 GEFSDEEDRIICNLFASIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111
789******************.*********.***********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 352 aa
Download sequence Send
to blast |
MGRAPCCDKA NVKKGPWSPD EDLKLKEYIE KNGTGGNWIS LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSDEEDRIIC NLFASIGSRW SVIAAQLPGR TDNDIKNYWN TKLKKKLFGR 120 PPTKNHHPFP SPLSSNPNSK PPFLSPPHQR PQPISYILNS SWISSSSSPS SSLVPDSVAV 180 SESGALRATE SYKSPWLGAF EGLTTSGCDQ QVFFLRPGFG GMNASEKGGY SYPNGGFLSK 240 KGDWYEDEQA VSFSDCSHQM EKAHFSNNNH AIINTKTMSD NSQQREYDMA LGDVPLTGVD 300 NPLFLQQQSA MDYSEYEGFT VWDGHYYHGI SSSNVNLSLT NNPIMNYKSD Q*
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Orthologous Group
? help Back to Top |
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |