 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
evm_27.model.AmTr_v1.0_scaffold00073.16 |
Common Name | AMTR_s00073p00061640, LOC18425270 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
Family |
CO-like |
Protein Properties |
Length: 391aa MW: 43444.5 Da PI: 5.0016 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm_27.model.AmTr_v1.0_scaffold00073.16 | genome | TAGP | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 27.4 | 6.8e-09 | 22 | 64 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
r C+ +++ +++++C ++ +lC+ C ++H+ H++v
evm_27.model.AmTr_v1.0_scaffold00073.16 22 RPCDSCGKGRARWYCAADDAFLCHACDGTIHSAnsvarrHDRV 64
78******99*********************657788888776 PP
|
2 | CCT | 68.3 | 2e-23 | 338 | 381 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
evm_27.model.AmTr_v1.0_scaffold00073.16 338 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 381
9*****************************************87 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 391 aa
Download sequence Send
to blast |
MTSSAESRRA VVAAAAGAKT VRPCDSCGKG RARWYCAADD AFLCHACDGT IHSANSVARR 60 HDRVRLKTSS SHRCEFVLPS WQRGKARSMR PHPNMKNPID GAKPHANPLV VPQMQEESSP 120 DEVDEQLLYQ VPVFEPMAAD LRSSPARATP ADCKPTIDTP AEMAVAKFSA IPSLDMDLAD 180 FAADVESLLG QGLDEDAFGI EGLGLLDNYR EEEEGVASRV KVEEEEDEDG IFGCSHHPDV 240 AEVELSSETL EFNFDYDTPT TAGEDDEEKC RIVLEKSISL RLDYEAVISA WGRSPWTTGQ 300 RPEFNPDDCW PDPFTGNCVP EMSTYSEVGN ATASDGGREA RVSRYREKRR TRLFSKKIRY 360 EVRKLNAEKR PRMKGRFVKR TSFPPTPYPF *
|
Nucleic Localization
Signal ? help
Back to Top |
 |
No. |
Start |
End |
Sequence |
1 | 348 | 364 | RRTRLFSKKIRYEVRKL |
Best hit in Arabidopsis thaliana ? help
Back to Top |
Hit ID |
E-value |
Description |
AT1G68520.1 | 2e-77 | B-box type zinc finger protein with CCT domain |