PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00064.106
Common NameAMTR_s00064p00208400
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 489aa    MW: 54581.9 Da    PI: 8.2235
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00064.106genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.9e-12315360454
                                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                                h + ErrRR+++N+ f+ Lr +lP +      K +Ka+iL ++ eY+ +L
  evm_27.model.AmTr_v1.0_scaffold00064.106 315 HHVISERRRREKLNELFQALRAMLPLD-----SKKDKASILSRTREYLGEL 360
                                               58899*********************8.....699************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.65E-13310365No hitNo description
SuperFamilySSF474591.31E-15311377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.193311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-14315382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-10316360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-13317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MDNVFFMDVD TRTLFIRALV RKLGWTYICL WACQLYPSKC LVFMDGWFND EGGQPSSSSG  60
SFPRTLFESY CQSLLSLDNG VPGLAHSHGM EDGLWLGGEG LINLASTDNQ RRFYQGAGIE  120
NAFFMSCQSG VIELGTSNPN VDLNMNPKNL ITDDVIRQFQ QREPPPWADP SRASSSSSSL  180
PSLSVGSPEY SNPAAITPPH LTIPAPAAHS ITLTRMLPGG IPTSYEAIIT RAILDVVSSS  240
PSSLSRVGAS RPSQRPGAFQ RYNSSGGVKA ERRVGVSQRL FKRSIAVLRR IREVRQRVEE  300
GAAAGTRPAS STQLHHVISE RRRREKLNEL FQALRAMLPL DSKKDKASIL SRTREYLGEL  360
KVQVKELNER NISLETRLSS RGVIIAETAL VASQEIETVE ITETADDREI ELRVRVVLEH  420
HGLEDLVVRI LQRLKRMEGF RVLSVSADSQ VQPQFDTAIF RFNVQGGRWD KSWFEEEIRK  480
ELIELQHT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319324ERRRRE
2320325RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020531660.10.0putative transcription factor bHLH041
TrEMBLU5DHA90.0U5DHA9_AMBTC; Uncharacterized protein
STRINGERN198480.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP85811114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.18e-28bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]