PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00023.14
Common NameAMTR_s00023p00044590
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 383aa    MW: 42359.9 Da    PI: 6.5075
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00023.14genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-1766116155
                                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                              + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta  Aa a+++a+++++g
  evm_27.model.AmTr_v1.0_scaffold00023.14  66 CNYRGVRQRT-WGKWVAEIREP---N-RgNRLWLGTFPTALAAALAYDEAARAMYG 116
                                              56*****999.**********8...2.359***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.72E-1966126No hitNo description
PfamPF008472.1E-1266116IPR001471AP2/ERF domain
PROSITE profilePS5103221.35167124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-3067125IPR001471AP2/ERF domain
SMARTSM003801.5E-3567130IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2067125IPR016177DNA-binding domain
PRINTSPR003677.4E-96879IPR001471AP2/ERF domain
PRINTSPR003677.4E-990106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MLHRRRKTRS RRHGCNSVAE TLARWKALNS HPEGSKDAPK WVRKVPAKGS KKGCMRGKGG  60
PENSRCNYRG VRQRTWGKWV AEIREPNRGN RLWLGTFPTA LAAALAYDEA ARAMYGSCAR  120
LNLPDTTESS LTSSISHSNS AEVSSHQIHL DQHSDRGKTG IEGDFDNRGS HALSNTAEVS  180
SHHNATHSSN PAEVSSHHDA THPYPSLDGD KIKIKSEYEN ISFACRPISS HHTCLEPSDG  240
GKIGIEREFE NMGFKRDEIV SNGPGVKLEA AEENLHQRPE VFQVDDMFDV QELLGMMDEE  300
EAGSPSGAHV ERDCLASPSA LSFQLNNPDA KLLGSLYHMD QLGTPYHMEQ GPALDYLGMQ  360
DYGFSKAFEE QAEDMNFPDL CF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1667124260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006828126.20.0ethylene-responsive transcription factor CRF1 isoform X1
TrEMBLW1NID00.0W1NID0_AMBTC; Uncharacterized protein
STRINGERM955420.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.12e-42ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]