PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00010.53
Common NameAMTR_s00010p00095120
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 288aa    MW: 32038.1 Da    PI: 4.5868
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.53genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.5e-1977127256
                                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                                              +y+GVr+++ +g+W+AeIrdp     +   r++lg+f t eeAa+a++a + +++g+
  evm_27.model.AmTr_v1.0_scaffold00010.53  77 KYRGVRQRP-SGKWAAEIRDP-----HrgIRVWLGTFETVEEAARAYDAKAVEYRGA 127
                                              8********.7*********6.....337*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.5E-3176135IPR001471AP2/ERF domain
PROSITE profilePS5103223.4277134IPR001471AP2/ERF domain
PfamPF008471.4E-1277126IPR001471AP2/ERF domain
CDDcd000181.26E-3177136No hitNo description
SMARTSM003805.1E-3277140IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-2277136IPR016177DNA-binding domain
PRINTSPR003671.1E-97889IPR001471AP2/ERF domain
PRINTSPR003671.1E-9100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSARTTAPSD PGDHQARRQE QEDAIMVRAF QQVISGSSLS PVGLEPEPAP SETYNGSSSN  60
PAEPTADPTL SSSKRRKYRG VRQRPSGKWA AEIRDPHRGI RVWLGTFETV EEAARAYDAK  120
AVEYRGARAK LNFPDDTLPL YQAALPIPRA PEKFNYQFES QPYQPHQQST ELREVGSTSA  180
SISSQGDAQI NEQVNVQYQQ TVQTSDYPVW DMVPNSSSCE HYYSTYESFS SESEFYGSLS  240
APLPQQNQTE GLPVSFATIP LDQDWIFTNP LDEFPFVATT RPPDHIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2073134163ATERF1
3gcc_A5e-2073134163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011622680.10.0ethylene-responsive transcription factor ERF112
TrEMBLW1NE630.0W1NE63_AMBTC; Uncharacterized protein
STRINGERM940770.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-28ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]