PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00003.302
Common NameAMTR_s00003p00252470, LOC18431520
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 350aa    MW: 38674.3 Da    PI: 9.3455
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00003.302genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.75.4e-54151421128
                                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya 69 
                                               lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky+
  evm_27.model.AmTr_v1.0_scaffold00003.302  15 LPPGFRFHPTDEELVVHYLKKKASSAPLPV-TIIAEVDLYKFDPWELPGKATFGEQEWYFFSPRDRKYP 82 
                                               79****************************.89***************8888999************** PP

                                       NAM  70 tgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                               +g r+nra++sgyWkatg+dk++l++ ++++vg+kk Lvfy gr pkg kt+W+mheyrl
  evm_27.model.AmTr_v1.0_scaffold00003.302  83 NGARPNRAATSGYWKATGTDKPILTSgGTQKVGVKKALVFYGGRPPKGIKTNWIMHEYRL 142
                                               ************************9977788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-659176IPR003441NAC domain
PROSITE profilePS5100562.15915176IPR003441NAC domain
PfamPF023653.9E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MESTDSSSNS QQPQLPPGFR FHPTDEELVV HYLKKKASSA PLPVTIIAEV DLYKFDPWEL  60
PGKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSGG TQKVGVKKAL  120
VFYGGRPPKG IKTNWIMHEY RLTDGGNTKP NNDLSNNNKK SSLRLDDWVL CRIYKKNNQS  180
PRLMERERED SMDDMLAPLP SMDGQPHKLP AQKPSTFGAL LENENFFDGL LTDDGVSNNM  240
NSMPQLPSSH QQNSTKSGGD LPLAPAALPF KRTLPSPYWN EAAMPLAKRF QSNQSTSGSN  300
DGSNSIATLL NQLPGAAAPF HHQGLLSSIG DGVFRPQYQQ FSGINWNSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-741218214171NO APICAL MERISTEM PROTEIN
1ut4_B5e-741218214171NO APICAL MERISTEM PROTEIN
1ut7_A5e-741218214171NO APICAL MERISTEM PROTEIN
1ut7_B5e-741218214171NO APICAL MERISTEM PROTEIN
4dul_A5e-741218214171NAC domain-containing protein 19
4dul_B5e-741218214171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006841705.10.0NAC transcription factor 56
SwissprotA0SPJ91e-105NAM2_HORVV; NAC transcription factor NAM-2
TrEMBLW1P8R50.0W1P8R5_AMBTC; Uncharacterized protein
STRINGERN033800.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-98NAC domain containing protein 2
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]