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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_89.42 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 335aa MW: 37414.9 Da PI: 5.5421 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.1e-20 | 192 | 242 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+++g +r++lg+f+ta eAaka+++a+ kl+g evm.model.supercontig_89.42 192 HYRGVRQRP-WGKFAAEIRDPNKRG--TRIWLGTFDTAIEAAKAYDRAAFKLRG 242 7********.**********96655..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-32 | 191 | 251 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-37 | 192 | 256 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-23 | 192 | 251 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.184 | 192 | 250 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.87E-32 | 192 | 250 | No hit | No description |
Pfam | PF00847 | 1.2E-14 | 192 | 242 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-13 | 193 | 204 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-13 | 232 | 252 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MATPNEVMTL ESIEKHLFGE NSPVGTTPWM SEAKPGVSVS SSAYSQTSSS GSSLTAASKF 60 QCLDETADFF HLPQNLAESG SDLFEFESKP QIIDLTTPKA TNSNEQLLEF EFQPCFFEFD 120 SKPQIPSQSN NFFDFQGITE TPSSSSPQWN RKPSLKISLP NKVEWIQFTN PIPEQDQARE 180 ARRRSSIEQK RHYRGVRQRP WGKFAAEIRD PNKRGTRIWL GTFDTAIEAA KAYDRAAFKL 240 RGSKAILNFP LEAGRCDEGG ENKRPREEDG EERAAKKVAK TGNDVIRGRD EDGPLTPSKW 300 MEVWDGDVKG LFNVPLLSPL SPHPPLGFPQ LMVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-29 | 191 | 251 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00549 | DAP | Transfer from AT5G47230 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_89.42 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021893680.1 | 0.0 | ethylene-responsive transcription factor 5-like | ||||
TrEMBL | A0A0D2N0W9 | 9e-96 | A0A0D2N0W9_GOSRA; Uncharacterized protein | ||||
STRING | evm.model.supercontig_89.42 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 3e-70 | ethylene responsive element binding factor 5 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_89.42 |