PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_85.133
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 366aa    MW: 40933.4 Da    PI: 6.7822
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_85.133genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00011285307123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   + C +Cgk F  + + ++H +++
  evm.model.supercontig_85.133 285 FMCRKCGKAFAVRGDWRTHEKNC 307
                                   89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.58201223IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.5E-6201220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64201228IPR007087Zinc finger, C2H2
PROSITE patternPS000280203223IPR007087Zinc finger, C2H2
SuperFamilySSF576671.74E-6267305No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5281305IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549285305IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808285305IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MADNSPYSNF LTGWFKFNPL HHYPSANPPP PPPPPPPSSS SSSSSSHPLY THFSYNFHQQ  60
QHQYPNPPTS PPLREALPLL SLTPTRKQNH EEEEEEEDQE VQEDGEDRLL SATTTTTTTT  120
LFSSASEDDD AAVTVALHIG LPSPSAAEMA SVLSSSSEIN TDKERDIHGG DESSGYPISR  180
LNKGQYWIPT PSQILIGPTQ FSCPVCCKTF NRYNNMQMHM WGHGSQYRKG PESLRGTQPT  240
GMLRLPCYCC APGCRNNIDH PRAKPLKDFR TLQTHYKRKH GIKPFMCRKC GKAFAVRGDW  300
RTHEKNCGKL WYCICGSDFK HKRSLKDHIR AFGNGHGAYG MDGFEEEDDP ASEVEQDNDS  360
SMQSK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_85.133
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893915.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-154ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2C9V9J00.0A0A2C9V9J0_MANES; Uncharacterized protein
STRINGevm.model.supercontig_85.1330.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-152C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]