PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_84.74
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 367aa    MW: 41142.8 Da    PI: 6.9402
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_84.74genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.6e-05200219120
                                  EEETTTTEEESSHHHHHHHH CS
                      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                  ++Cp C k+F+r  n++ H+
  evm.model.supercontig_84.74 200 FSCPLCFKTFNRYNNMQMHM 219
                                  89*****************9 PP
2zf-C2H214.20.00013284306123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                  + C +Cgk F  + + ++H +++
  evm.model.supercontig_84.74 284 FMCRKCGKNFAVRGDWRTHEKNC 306
                                  89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.1E-5200219IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66200227IPR007087Zinc finger, C2H2
PROSITE patternPS000280202222IPR007087Zinc finger, C2H2
SuperFamilySSF576674.29E-6266304No hitNo description
Gene3DG3DSA:3.30.160.605.1E-5280304IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.559284304IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MSDQYPYSNY FHGWTFNLNS LHHHFSSSNP PSFNFTAPYH PCNNILSANI NSSITHHYCH  60
IPSSSSISPP SPPLLEALPL LSSSPVRHDH EQEFSSSTME VDDYKNISKD KEDSAAASVD  120
IDDGDHESVT VALHLGLPSP DLISGFSSTE ITEKDEDQDQ DQVSTVAASS NSSGFLPGKL  180
NKGQYWIPTP TQILIGPTQF SCPLCFKTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTA  240
MLRLPCYCCA PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG IKPFMCRKCG KNFAVRGDWR  300
THEKNCGKLW YCICGSDFKH KRSLKDHIKA FGNGHAAHGI HCFGHQEEDD PASEIEQDNE  360
TCSIDQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_84.74
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894158.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-130ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1R3I6D51e-161A0A1R3I6D5_9ROSI; Uncharacterized protein
STRINGevm.model.supercontig_84.740.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-128C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]