 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
evm.model.supercontig_80.94 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
NAC |
| Protein Properties |
Length: 353aa MW: 38707.5 Da PI: 8.0682 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_80.94 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 173.4 | 6.6e-54 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82
lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgy
evm.model.supercontig_80.94 15 LPPGFRFHPTDEELVVHYLKKKASSAPLPV-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGY 95
79****************************.88***************988899**************************** PP
NAM 83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
Wkatg+dk+vl++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl
evm.model.supercontig_80.94 96 WKATGTDKPVLTSgGTQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142
***********9977788***************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009753 | Biological Process | response to jasmonic acid |
| GO:0045995 | Biological Process | regulation of embryonic development |
| GO:0048317 | Biological Process | seed morphogenesis |
| GO:0080060 | Biological Process | integument development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 353 aa
Download sequence Send
to blast |
MESTDSSAGS RQPQLPPGFR FHPTDEELVV HYLKKKASSA PLPVAIIAEV DLYKFDPWEL 60
PAKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVLTSGG TQKVGVKKAL 120
VFYGGKPPKG IKTNWIMHEY RLADNKTNNK PPGCIDLGNR KNSLRLDDWV LCRIYKKNNT 180
NRPMDHDKED SMDDMLGPIL PSISVGCNGK LHLPTKSIGY GSLLDNDQNL FEGMISNDGI 240
NNGTAMSQLE SSSSKAELSG LSAKRTLPSL YWADEEPGGG PSTSKKFHGD INDGGINGRE 300
EVDNGNGSVV TLLSQLQPQN NTSLHPSQSM LGFMADGIFR PPFQLPGLNW YS*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 5e-74 | 12 | 180 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 5e-74 | 12 | 180 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 5e-74 | 12 | 180 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 5e-74 | 12 | 180 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 5e-74 | 12 | 180 | 14 | 168 | NAC domain-containing protein 19 |
| 4dul_B | 5e-74 | 12 | 180 | 14 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
