PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_72.47
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 209aa    MW: 22769 Da    PI: 5.7884
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_72.47genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.82e-21106155255
                          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                  +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+tae Aa+a+++a+++++g
  evm.model.supercontig_72.47 106 KYRGVRQRP-WGKWAAEIRDpF-----KaTRVWLGTFDTAEAAARAYDQAALSFRG 155
                                  8********.**********66.....56************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.9E-34105164IPR001471AP2/ERF domain
CDDcd000181.08E-23106165No hitNo description
SuperFamilySSF541712.81E-23106165IPR016177DNA-binding domain
PROSITE profilePS5103225.37106163IPR001471AP2/ERF domain
PfamPF008477.0E-15106155IPR001471AP2/ERF domain
SMARTSM003805.0E-38106169IPR001471AP2/ERF domain
PRINTSPR003672.5E-12107118IPR001471AP2/ERF domain
PRINTSPR003672.5E-12129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MMSGRREREM SAMVSALTHV VAGEMPTVND GFEDWWSSGS EVQNGARKEE EEEGEEEHRD  60
GGPSYVIPHA VDSSSSIPVR GDQNQTVVTY EYSSSSSSGR EEGRRKYRGV RQRPWGKWAA  120
EIRDPFKATR VWLGTFDTAE AAARAYDQAA LSFRGSKAKL NFPENVKLRS SPSPSPSPSG  180
LVPMFSAPMQ STGAQFPSQP PYPSSSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-231061701479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_72.47
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895520.11e-150ethylene-responsive transcription factor ABR1-like
TrEMBLA0A1S3B3125e-49A0A1S3B312_CUCME; ethylene-responsive transcription factor ABR1
STRINGevm.model.supercontig_72.471e-149(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-23related to AP2 6