PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_7.145
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 332aa    MW: 37399.5 Da    PI: 9.2049
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_7.145genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.23.6e-141196193
                                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                           B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84
                                 ffkvl     ++++ l +p  f++  +++ ++    +l +++g  + v +  ++  g  ++++GW++Fv++n L+ gDf+vF +
  evm.model.supercontig_7.145 11 FFKVL--IGDFSTQ-LQIPPAFVKYVNSVVPQ--NFQLCNPDGICFPVVV--ERVEGNLYFKNGWRKFVQDNSLELGDFLVFLY 87
                                 66666..5556654.99******555777555..69999***********..******************************** PP

                                 -SSSEE..E CS
                           B3 85 dgrsefelv 93
                                 +g+s+f   
  evm.model.supercontig_7.145 88 VGNSRFDVE 96
                                 **9999443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-207103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-237103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.1118101IPR003340B3 DNA binding domain
CDDcd100172.03E-18998No hitNo description
PfamPF023621.6E-121195IPR003340B3 DNA binding domain
SMARTSM010191.3E-1111101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MVGDIGKKPS FFKVLIGDFS TQLQIPPAFV KYVNSVVPQN FQLCNPDGIC FPVVVERVEG  60
NLYFKNGWRK FVQDNSLELG DFLVFLYVGN SRFDVELYGR DCCQKEISMS TRRHPKPLSC  120
NETRNIDKAA SGSRPREKRY GESMLTYERK RHENATQEHA SNLDSSPVVK FSNSKKRIVD  180
LDSPLAEGDT QAEAKITNVV SIDSDGSGDD LNGTPNSKNQ EPLCQIAPVV TSNVLGQASP  240
AFKSEYPRFQ VVMRSAYVRN GYLGQREGNL ETRLQILFRG RRIMFRLAIT ERMRMNRTIF  300
LDREGGTGGC QLFESCCKYQ KKKDSVTNAI K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_7.145
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907672.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
RefseqXP_021907673.10.0putative B3 domain-containing protein Os03g0621600 isoform X2
STRINGevm.model.supercontig_7.1450.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14995620
Representative plantOGRP8585614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.15e-20B3 family protein