 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_65.37 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
MYB |
| Protein Properties |
Length: 377aa MW: 42823.2 Da PI: 6.6953 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_65.37 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 53.1 | 7.3e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
+g+W++eEd +l+d+++++G+g +W + +++ g++R++k+c++rw++yl
evm.model.supercontig_65.37 14 KGPWSPEEDSKLKDYIEKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
79*********************************************97 PP
|
| 2 | Myb_DNA-binding | 41.6 | 2.8e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g ++ eEd ++ +++ G++ W+ Ia++++ gRt++++k++w++
evm.model.supercontig_65.37 69 GEFSDEEDRIICSLFATIGSR-WSIIAAHLP-GRTDNDIKNYWNT 111
789******************.*********.***********97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 377 aa
Download sequence Send
to blast |
MGRAPCCDKA NVKKGPWSPE EDSKLKDYIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60
YLRPNIKHGE FSDEEDRIIC SLFATIGSRW SIIAAHLPGR TDNDIKNYWN TKLKKKLMAM 120
AASPNSHRKP PLPSSLQAPP PPPPPSPPSS SSLYKDFYSS FYTNSTKSFS GTGLELPIIN 180
PNLMLSNSSS ANSLLQNQDQ SFLLSSMQQS YYPNVKDQSN FLVFGSDQTA SCSSSDGSCS 240
QNNISNGPRE IKQEDHHHRS FMSNGYHHHH HHQDQDHQKY SLLLKNMSLA NYNNNCQYWA 300
DQDKNQNFNG EESRLDYGDV DLDQDVKQLV NSSNTVYNDD NNSNNYFFFN IDENKTQQEA 360
GDDEEDQKVM MYFYNY*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KM052721 | 1e-114 | KM052721.1 Gossypium hirsutum RAX-like transcription factor RAX2 mRNA, complete cds. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM4 | 28 | 2646 |
| Representative plant | OGRP5 | 17 | 1784 |
