PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_53.160
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 349aa    MW: 38087.8 Da    PI: 8.044
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_53.160genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00083147169123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+C+ C+++F++   L  H  +H
  evm.model.supercontig_53.160 147 YECKTCNRTFPSFQALGGHRASH 169
                                   99**********99999998887 PP
2zf-C2H213.10.0003230252123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++Cg  F++   L  H+r+H
  evm.model.supercontig_53.160 230 HECSICGAEFTSGQALGGHMRRH 252
                                   78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.2E-13146171IPR007087Zinc finger, C2H2
SuperFamilySSF576675.51E-9146169No hitNo description
SMARTSM003550.052147169IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.843147174IPR007087Zinc finger, C2H2
PROSITE patternPS000280149169IPR007087Zinc finger, C2H2
SuperFamilySSF576675.51E-9225252No hitNo description
Gene3DG3DSA:3.30.160.601.7E-4226254IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139129.1E-13229254IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.388230257IPR007087Zinc finger, C2H2
SMARTSM003550.01230252IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280232252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDAPKEATMG SKEQTQIVKG KRTKRQRPQS PIPSIFPTDQ THHLHHLAGE ELLSGFDYNS  60
ENNETHNLHS PSSCSNHSKD QVEEEDMANC LILLAQGQSR DNHNNHNNKS PTTGGGGGGG  120
DICKFNSRRF LETASNGNGS KAGYFVYECK TCNRTFPSFQ ALGGHRASHK KPKPTTLYDH  180
KKQNLSDEEE NHGQFRNLSL LSLQLSNNTH NPNRSNQYNT TTNKSGNKVH ECSICGAEFT  240
SGQALGGHMR RHRGTVGSSS GAGAGAATAL SLTPVSVCGV LESDHHHQRH HPAKKARTAL  300
SLDLDLNLPA PEDDNREPEF SLGNSKQQEK QQKSPLVFSA PTLVDCHY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_53.160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897891.10.0zinc finger protein ZAT5
TrEMBLA0A061FP506e-99A0A061FP50_THECC; C2H2-type zinc finger family protein, putative
STRINGevm.model.supercontig_53.1600.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-83C2H2 family protein