PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_3.43
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 353aa    MW: 39259.4 Da    PI: 4.4744
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_3.43genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19122171255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                 +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  evm.model.supercontig_3.43 122 KFRGVRQRP-WGKWAAEIRDPA----RgVRLWLGTYDTAEEAAMVYDNAAIKLRG 171
                                 89*******.**********82....36*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.8E-30121179IPR001471AP2/ERF domain
CDDcd000181.21E-33122178No hitNo description
PfamPF008478.2E-13122171IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-22122179IPR016177DNA-binding domain
SMARTSM003801.9E-38122185IPR001471AP2/ERF domain
PROSITE profilePS5103223.591122179IPR001471AP2/ERF domain
PRINTSPR003673.9E-10123134IPR001471AP2/ERF domain
PRINTSPR003673.9E-10145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MMMMDQSILC PVKYTEHKNI TKKFAKPSSF NHKEVTNQHT EVVHRVVRIS MTDHDATDSS  60
SDDEEDPFFS RQRVKKFVNE INIEPKNDVV IASSKKRPAA GPPSRRRPLK LPSCSKGENG  120
RKFRGVRQRP WGKWAAEIRD PARGVRLWLG TYDTAEEAAM VYDNAAIKLR GPDALTNFVT  180
PPAKESEKPE VNTSGSGYES GDESHNLSSP TSVLNFRTHS TDEAEPQKSA EPVNEPEEQE  240
SKSNPEPVQN SSQLMDESGD SMPMDFPFLD DFFNDSIPPM PLFDEPCSSS VFSDVVSDEP  300
SDSVFLDATF HDVGFVSTSF GDFGTSPAMF GQVDDYFQDI DDLFLSDPLV AL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22120178362ATERF1
3gcc_A1e-22120178362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_3.43
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909040.10.0ethylene-responsive transcription factor CRF4
TrEMBLA0A061G2191e-122A0A061G219_THECC; Ethylene-responsive transcription factor, putative
STRINGevm.model.supercontig_3.430.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-58cytokinin response factor 4