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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_21.133 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 81aa MW: 9175.65 Da PI: 10.8372 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.9 | 1.5e-29 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++ +s evm.model.supercontig_21.133 9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVTHFS 58 79********************************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.221 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.0E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.53E-37 | 2 | 72 | No hit | No description |
SuperFamily | SSF55455 | 5.62E-32 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-28 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVTHFSGS 60 KSIEEILARY VNVPEHERGR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 5e-21 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
6byy_B | 5e-21 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
6byy_C | 5e-21 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
6byy_D | 5e-21 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
6bz1_A | 5e-21 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
6bz1_B | 5e-21 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
6bz1_C | 5e-21 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
6bz1_D | 5e-21 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_21.133 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU142913 | 1e-42 | GU142913.1 Hevea brasiliensis MADS-box transcription factor 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021903579.1 | 4e-52 | agamous-like MADS-box protein AGL66 | ||||
Swissprot | Q9LM46 | 2e-36 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | A0A2I4FQ90 | 2e-47 | A0A2I4FQ90_JUGRE; agamous-like MADS-box protein AGL104 isoform X1 | ||||
TrEMBL | A0A2I4FQ97 | 2e-47 | A0A2I4FQ97_JUGRE; agamous-like MADS-box protein AGL104 isoform X2 | ||||
STRING | evm.model.supercontig_21.133 | 1e-52 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 8e-39 | AGAMOUS-like 104 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_21.133 |
Publications ? help Back to Top | |||
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