PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

M-type_MADS

Protein Properties

Length: 243aa MW: 27292.6 Da PI: 4.6972

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_20.85	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	72.6	3.2e-23	28	74	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +nk rqvtfskRr+g++KKA+EL+vLC+ae+a+i fs+++k +++ evm.model.supercontig_20.85 28 LQNKNARQVTFSKRRTGLFKKASELCVLCGAEIAIIAFSPNDKPFTF 74 689***************************************98888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.595	18	78	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.3E-32	18	77	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.32E-35	19	87	No hit	No description
SuperFamily	SSF55455	5.23E-29	19	91	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-20	20	40	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.3E-25	29	74	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-20	40	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-20	55	76	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MKKIISNNNN NNKIKTSKGR QKIEIKELQN KNARQVTFSK RRTGLFKKAS ELCVLCGAEI 60 AIIAFSPNDK PFTFGHPNVD SIVDRYLADN NHTDDDYNQS EGQEISETMT LDPSLQELNR 120 EYEEAMEELK EEKKRAKKIE EVKKESGEGF WWDESVDGLE LDELEEYVKA LEELRKKVIN 180 RGKELVMMED MAVAGIGSST DVVVDHQQMS TGCGSSSVID DGCSNNGGFH GFSFGFGDIM 240 KF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	9e-15	19	90	1	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	9e-15	19	90	1	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	9e-15	19	90	1	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	9e-15	19	90	1	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A	1e-14	19	86	1	68	Myocyte-specific enhancer factor 2A
3kov_B	1e-14	19	86	1	68	Myocyte-specific enhancer factor 2A
3kov_I	1e-14	19	86	1	68	Myocyte-specific enhancer factor 2A
3kov_J	1e-14	19	86	1	68	Myocyte-specific enhancer factor 2A
3p57_A	1e-14	19	86	1	68	Myocyte-specific enhancer factor 2A
3p57_B	1e-14	19	86	1	68	Myocyte-specific enhancer factor 2A
3p57_C	1e-14	19	86	1	68	Myocyte-specific enhancer factor 2A
3p57_D	1e-14	19	86	1	68	Myocyte-specific enhancer factor 2A
3p57_I	1e-14	19	86	1	68	Myocyte-specific enhancer factor 2A
3p57_J	1e-14	19	86	1	68	Myocyte-specific enhancer factor 2A
5f28_A	1e-14	19	86	2	69	MEF2C
5f28_B	1e-14	19	86	2	69	MEF2C
5f28_C	1e-14	19	86	2	69	MEF2C
5f28_D	1e-14	19	86	2	69	MEF2C
6byy_C	1e-14	19	86	2	69	MEF2 CHIMERA
6byy_D	1e-14	19	86	2	69	MEF2 CHIMERA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_20.85

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021903842.1	1e-180	agamous-like MADS-box protein AGL61
TrEMBL	A0A2R6RC51	1e-58	A0A2R6RC51_ACTCH; Agamous-like MADS-box protein
STRING	evm.model.supercontig_20.85	1e-179	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15814	7	14
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	1e-37	AGAMOUS-like 61

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_20.85